Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00919 ATGGCCTTCACTTCCACTCTTACCGCTACTTCTTCAGCCTCTCCCCTCTCCTCCAAACCCCATTCCCTTCCTCAATTCACCCCTCACATTTCCTTTCCCTTTACCCTCAGATCCTCCAAATCCCTCTTTTCTCCCGACGGAATCGGCCCTGCTTTGGGACTCGGATTATCCGTGAAAGCCCAAACTCTTGAATTTTCAGGCTCGTTCTTCCAAGGTGGGTTCGGGACTGAGGATGAACCCCCTACTTCTCCGGGGACAGGCTTCGCTATTGACCTTGAAGATAAGGAGGAGCCTCAATGCCCTCCTGGACTTCGGAAGTACGAATCTATGGTGGTTCTGAGGCCTGACATGTCTGAAGATGAGAGACTCGCTCTCACCCAGAAATACGAAGAGTTGCTTGTTGCTGGGGGTGGCATGTATGTGGAGGTATTCCACAAAGGGGTGGTTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACAAACACTTACTTGGATGGAATCTCTCTCCTCTTCACCTACTTCACAAAACCCGAATCAATGGGAATTCTCGAGGCAACGCTTCAAGCAGACGACGATGTTGTTCGATCAATGAGTTTCAAGATATTAAATTTGTAA 627 48.33 MAFTSTLTATSSASPLSSKPHSLPQFTPHISFPFTLRSSKSLFSPDGIGPALGLGLSVKAQTLEFSGSFFQGGFGTEDEPPTSPGTGFAIDLEDKEEPQCPPGLRKYESMVVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTKPESMGILEATLQADDDVVRSMSFKILNL 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5473398 5480745 + CmaCh02G009190.1 Cma02g00919 288670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00919 208 Hamap 30S ribosomal protein S6 [rpsF]. 104 207 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cma02g00919 208 SUPERFAMILY Ribosomal protein S6 104 204 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cma02g00919 208 MobiDBLite consensus disorder prediction 1 22 - -
Cma02g00919 208 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 17 205 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cma02g00919 208 PANTHER 30S RIBOSOMAL PROTEIN S6 ALPHA, CHLOROPLASTIC 17 205 - -
Cma02g00919 208 Pfam Ribosomal protein S6 106 204 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cma02g00919 208 Gene3D - 104 207 IPR014717 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00919 K02990 RP-S6, MRPS6, rpsF; small subunit ribosomal protein S6 - csv:101207012 319.316
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01288 Cma-Chr15:8166496 Cma02g00919 Cma-Chr2:5473398 3.98E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g185 Blo02g01162 . . . . Bpe07g00059 . . . . Cma02g00919 . Car02g00669 Car15g01252 . . . . . . . . . . . . . . . . . Cone8ag0235 Cone12ag0240 . . . . . . . . . . . . . Bma12g00618 . Cmo02g00927 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012141 0 1 2 1 1 1 2 1 0 1 1 1 1 1 1 2 0 2 2 0 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00919 Cma_Chr02 FPKM 6.191253 7.462572 13.965403 12.410682 112.609436 109.319031 118.891716 8.114319 7.16984 7.217632