Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00920 ATGGGTGTGCCTCAAACTTCAGCAGCCCCTCCTCATCTTTATCCCCAAGCCCTGCAACTCAAGCTTTATCAGGCCTTCATATTCTCCATTCCCATTCTCTTTTCCATTATTCTCTTCCTTCTTTTCTACTTGTTTTATCTCAAGAGAAGGGCTTCTTCTCTTTCTTCTTCTTCTTCTTCTTCTCCTCCTCCTCCGATTCTTCCCACAACTTCTAATCGACTCACTCTCTATGTTACAACTGCTTGTCGAGTGGATTTGAAGGCGAATAATCCCATTGACAAACTTCCCAAGATCTTTTTCAATGAAGAGCTAAGAAGCAGGGATTCTCTGTGCTGCGTCTGCTTGGGAGAATTCGAGATAAAAGAGGAATTGTTGCAAGTCCCATCATGCAAACATGTGTTTCATATTGACTGCATGAATCTCTGGCTCGCCTCCAACTCAACTTGCCCTCTTTGTAGGTGCTCAGTTATCCCAACAACCCGATGTTCTGACCCGCCCGTTCTTGTGCCGCCACAACTAACGCCGCCCCCGCCTCCGCCACTGGCTGCCTCATTGGAGCTTCCCCTGGCTTCTAACCAGACTGCAGAGATGGTATCATATTCACTCCAACATCCGCAGCTGCAACAACAGATAGGATCAAGTCAGAGTATATGCTAA 657 46.73 MGVPQTSAAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSPPPPILPTTSNRLTLYVTTACRVDLKANNPIDKLPKIFFNEELRSRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMNLWLASNSTCPLCRCSVIPTTRCSDPPVLVPPQLTPPPPPPLAASLELPLASNQTAEMVSYSLQHPQLQQQIGSSQSIC 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5482126 5484966 + CmaCh02G009200.1 Cma02g00920 288671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00920 218 Pfam Ring finger domain 111 153 IPR001841 -
Cma02g00920 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 158 IPR013083 -
Cma02g00920 218 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 5 167 - -
Cma02g00920 218 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Cma02g00920 218 SUPERFAMILY RING/U-box 91 163 - -
Cma02g00920 218 SMART ring_2 111 152 IPR001841 -
Cma02g00920 218 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00920 K19039 ATL7_58_59; E3 ubiquitin-protein ligase ATL7/58/59 [EC:2.3.2.27] - csv:101207251 244.202
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00920 Cma15g01289 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00920 Cma-Chr2:5482126 Cma09g01201 Cma-Chr9:7827621 7.00E-23 dispersed
Cma15g01289 Cma-Chr15:8181182 Cma02g00920 Cma-Chr2:5482126 1.07E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g184 . . . Bda08g00453 . . . . . . Cma02g00920 Cma15g01289 Car02g00670 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00928 Cmo15g01360 . . . . . Cpe13g00098 . . . . . . . . . . . . . . . . . Cme09g01852
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010674 2 1 1 0 1 1 1 0 1 0 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00920 Cma_Chr02 FPKM 9.952322 10.760512 15.100432 14.149857 3.295901 2.902365 3.586355 0.495568 0.0 0.324483