Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00922 ATGACTTTTCATGGAGGAGATTCGTATACGCACTCTTGTGTTTCCGCTCAAGGTCGTGGAAGAGATGATCTGTACATGGAGCTATGGAGGGCTTGCGCAGGTCCACTGGTTGATATACCTCGAGTTGATGAGAAAGTCTTCTATTTCCCTCAGGGGCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTTCCTCGAAGATTCTCTGTCGCGTAATTCATATAGAGCCGCTGGCAGATCATGAATCTGATGAGGTTTATGCGCAAATAAATTTGTTGCCGGAATCAAATCAAAGTGAGCCTAGAAGTTTAGATCCATGCCCTCCTGAACCTGTCAAACCAGTTGTTCACTCGTTCTGTAAGGTTTTAACTGCTTCTGATACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCTAACGAGTGCTTACCTCCTTTGGACATGACTCAGGCTACACCAACTCAGGATCTGGTTGCGAAGGATCTTCATGGATATGAGTGGCGATTTAAACATATTTTTAGAGGTCAGCCACGAAGGCACCTACTAACGACGGGGTGGAGTACATTTGTTACTTCTAAAAGATTAACTGCTGGAGATTCCTTTGTATTCTTGAGGGGAGACAATGGACAGTTGCGTGTTGGGGTGAGGCGTCGTGCTCAACAGCAAAGCAGCATGCCACCATCTGTGATATCGAGTCAGAGCATGCACCTAGGAGTGCTCGCAACTGCATCTCATGCTGTTACAACCCAAACCCGTTTTGTTGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATTATAAATTTTCTCTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGTTGGAGATATTTCACCTCATTGGGCCAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAGCAAACATCTATTCTAAGACCTGACAGGGTTTCGCCTTGGGATATAGAACCACTCACGTCTTCAGCGGTCTCAAGTTTGTCTCAACACGTTTCAAAAAACAAAAGGCCTCGACAATCGACTGAAACTCCAGCTCATGATGGTGCTGATTTGACTAAGTCAGCACATTGGGATTCTGGATTGGCACAATCTCATGATGGTAAACAGTGCGGTAATGCAACTGAGAGCAGAAAAGGTGAAAATAATGAACTGTGTCATCATAGTGAGATAGATACTATCAGCAACAGCACATGTGTCTCAAGAACACAGACTGATGGGACCTGGCTATTTTCTACCCAATCCAATGGTTATAAAGACCCAGTAAATGATATAGCACAGGATTATAAAACTGTACCTGTCTGTGGTTGGTCTATTCTGTCTGGACCATCAAAGGTAAGTGATGATCAAATACTTGATCCTACTGAAAATGGGAGGAAAGGCGAAACTGTTGCTAGTTGTAGATTGTTTGGCATTGATCTCAATCATTTGGCTAAACTTCCTGCTGAGAAAGCATCTTCTCAACCAAGCAGTATGTCTAGTGACACAGATGGGCGCATCAGCACCTTGTCAGTGGCTCAGTCCGATTCAAAATCTGGCAACAGAGAGGCCTCTATACAAAGAAAGTTACAAGCATCTCTGAAGGAGACTCAAAGTAGCTCAACTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGAATGGCCGTGGGTAGGGCAGTAGATTTAACCATCTTAGAAGGCTATGACCAATTAATAGATGAACTTGAGAAGATGTTTGATGTCAAGGGACAGCTGTCTGCACGAGATAAGTGGGAGATTGTATATACTGACGATGAAGGGGACATGATGCTTGTTGGAGACGATCCATGGGAAGAATTCTGTAACATGGTGAGAAGAATTTTTATATGCTCTAGGGAGCAAGTGAAAAAGATGAGCTCAGGAAGCAAGCAGCTGGCGTCAATAGAAGTTGAAGGGGCAGTAGTAATCCCCGACTCCCCTGCAATTTGA 2061 43.62 MTFHGGDSYTHSCVSAQGRGRDDLYMELWRACAGPLVDIPRVDEKVFYFPQGHMEQLEASTNLELNKRIPLFNLSSKILCRVIHIEPLADHESDEVYAQINLLPESNQSEPRSLDPCPPEPVKPVVHSFCKVLTASDTSTHGGFSVLRKHANECLPPLDMTQATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLTAGDSFVFLRGDNGQLRVGVRRRAQQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNYKFSLGMRFNMSFEGEDSPERRFSGTIIGVGDISPHWANSSWRSLRVQWDEQTSILRPDRVSPWDIEPLTSSAVSSLSQHVSKNKRPRQSTETPAHDGADLTKSAHWDSGLAQSHDGKQCGNATESRKGENNELCHHSEIDTISNSTCVSRTQTDGTWLFSTQSNGYKDPVNDIAQDYKTVPVCGWSILSGPSKVSDDQILDPTENGRKGETVASCRLFGIDLNHLAKLPAEKASSQPSSMSSDTDGRISTLSVAQSDSKSGNREASIQRKLQASLKETQSSSTNTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVKGQLSARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKKMSSGSKQLASIEVEGAVVIPDSPAI 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5485375 5490652 - CmaCh02G009220.1 Cma02g00922 288673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00922 686 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Cma02g00922 686 MobiDBLite consensus disorder prediction 373 391 - -
Cma02g00922 686 Gene3D - 126 231 IPR015300 -
Cma02g00922 686 SMART B3_2 129 231 IPR003340 GO:0003677
Cma02g00922 686 Pfam Auxin response factor 255 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma02g00922 686 CDD B3_DNA 127 229 IPR003340 GO:0003677
Cma02g00922 686 SUPERFAMILY CAD & PB1 domains 569 651 - -
Cma02g00922 686 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 673 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma02g00922 686 MobiDBLite consensus disorder prediction 363 419 - -
Cma02g00922 686 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Cma02g00922 686 MobiDBLite consensus disorder prediction 518 557 - -
Cma02g00922 686 MobiDBLite consensus disorder prediction 521 557 - -
Cma02g00922 686 Pfam AUX/IAA family 621 653 IPR033389 -
Cma02g00922 686 Pfam AUX/IAA family 565 611 IPR033389 -
Cma02g00922 686 Gene3D - 570 663 - -
Cma02g00922 686 ProSiteProfiles PB1 domain profile. 575 656 IPR000270 GO:0005515
Cma02g00922 686 Gene3D - 290 364 - -
Cma02g00922 686 PANTHER AUXIN RESPONSE FACTOR 9 19 673 - -
Cma02g00922 686 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00922 Cma16g00533 CCT
Cma02g00922 Cma16g00533 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00922 Cma-Chr2:5485375 Cma04g00675 Cma-Chr4:3436434 0 dispersed
Cma04g01901 Cma-Chr4:9974922 Cma02g00922 Cma-Chr2:5485375 0 transposed
Cma08g00114 Cma-Chr8:601684 Cma02g00922 Cma-Chr2:5485375 0 transposed
Cma15g01291 Cma-Chr15:8184046 Cma02g00922 Cma-Chr2:5485375 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34489 PF02362 B3 1.50E-21 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00922 K14486 - csv:101209208 1177.16