Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g00922 | ATGACTTTTCATGGAGGAGATTCGTATACGCACTCTTGTGTTTCCGCTCAAGGTCGTGGAAGAGATGATCTGTACATGGAGCTATGGAGGGCTTGCGCAGGTCCACTGGTTGATATACCTCGAGTTGATGAGAAAGTCTTCTATTTCCCTCAGGGGCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTTCCTCGAAGATTCTCTGTCGCGTAATTCATATAGAGCCGCTGGCAGATCATGAATCTGATGAGGTTTATGCGCAAATAAATTTGTTGCCGGAATCAAATCAAAGTGAGCCTAGAAGTTTAGATCCATGCCCTCCTGAACCTGTCAAACCAGTTGTTCACTCGTTCTGTAAGGTTTTAACTGCTTCTGATACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCTAACGAGTGCTTACCTCCTTTGGACATGACTCAGGCTACACCAACTCAGGATCTGGTTGCGAAGGATCTTCATGGATATGAGTGGCGATTTAAACATATTTTTAGAGGTCAGCCACGAAGGCACCTACTAACGACGGGGTGGAGTACATTTGTTACTTCTAAAAGATTAACTGCTGGAGATTCCTTTGTATTCTTGAGGGGAGACAATGGACAGTTGCGTGTTGGGGTGAGGCGTCGTGCTCAACAGCAAAGCAGCATGCCACCATCTGTGATATCGAGTCAGAGCATGCACCTAGGAGTGCTCGCAACTGCATCTCATGCTGTTACAACCCAAACCCGTTTTGTTGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATTATAAATTTTCTCTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGTTGGAGATATTTCACCTCATTGGGCCAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAGCAAACATCTATTCTAAGACCTGACAGGGTTTCGCCTTGGGATATAGAACCACTCACGTCTTCAGCGGTCTCAAGTTTGTCTCAACACGTTTCAAAAAACAAAAGGCCTCGACAATCGACTGAAACTCCAGCTCATGATGGTGCTGATTTGACTAAGTCAGCACATTGGGATTCTGGATTGGCACAATCTCATGATGGTAAACAGTGCGGTAATGCAACTGAGAGCAGAAAAGGTGAAAATAATGAACTGTGTCATCATAGTGAGATAGATACTATCAGCAACAGCACATGTGTCTCAAGAACACAGACTGATGGGACCTGGCTATTTTCTACCCAATCCAATGGTTATAAAGACCCAGTAAATGATATAGCACAGGATTATAAAACTGTACCTGTCTGTGGTTGGTCTATTCTGTCTGGACCATCAAAGGTAAGTGATGATCAAATACTTGATCCTACTGAAAATGGGAGGAAAGGCGAAACTGTTGCTAGTTGTAGATTGTTTGGCATTGATCTCAATCATTTGGCTAAACTTCCTGCTGAGAAAGCATCTTCTCAACCAAGCAGTATGTCTAGTGACACAGATGGGCGCATCAGCACCTTGTCAGTGGCTCAGTCCGATTCAAAATCTGGCAACAGAGAGGCCTCTATACAAAGAAAGTTACAAGCATCTCTGAAGGAGACTCAAAGTAGCTCAACTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGAATGGCCGTGGGTAGGGCAGTAGATTTAACCATCTTAGAAGGCTATGACCAATTAATAGATGAACTTGAGAAGATGTTTGATGTCAAGGGACAGCTGTCTGCACGAGATAAGTGGGAGATTGTATATACTGACGATGAAGGGGACATGATGCTTGTTGGAGACGATCCATGGGAAGAATTCTGTAACATGGTGAGAAGAATTTTTATATGCTCTAGGGAGCAAGTGAAAAAGATGAGCTCAGGAAGCAAGCAGCTGGCGTCAATAGAAGTTGAAGGGGCAGTAGTAATCCCCGACTCCCCTGCAATTTGA | 2061 | 43.62 | MTFHGGDSYTHSCVSAQGRGRDDLYMELWRACAGPLVDIPRVDEKVFYFPQGHMEQLEASTNLELNKRIPLFNLSSKILCRVIHIEPLADHESDEVYAQINLLPESNQSEPRSLDPCPPEPVKPVVHSFCKVLTASDTSTHGGFSVLRKHANECLPPLDMTQATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLTAGDSFVFLRGDNGQLRVGVRRRAQQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNYKFSLGMRFNMSFEGEDSPERRFSGTIIGVGDISPHWANSSWRSLRVQWDEQTSILRPDRVSPWDIEPLTSSAVSSLSQHVSKNKRPRQSTETPAHDGADLTKSAHWDSGLAQSHDGKQCGNATESRKGENNELCHHSEIDTISNSTCVSRTQTDGTWLFSTQSNGYKDPVNDIAQDYKTVPVCGWSILSGPSKVSDDQILDPTENGRKGETVASCRLFGIDLNHLAKLPAEKASSQPSSMSSDTDGRISTLSVAQSDSKSGNREASIQRKLQASLKETQSSSTNTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVKGQLSARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKKMSSGSKQLASIEVEGAVVIPDSPAI | 686 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5485375 | 5490652 | - | CmaCh02G009220.1 | Cma02g00922 | 288673 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g00922 | 686 | SUPERFAMILY | DNA-binding pseudobarrel domain | 120 | 258 | IPR015300 | - | |
Cma02g00922 | 686 | MobiDBLite | consensus disorder prediction | 373 | 391 | - | - | |
Cma02g00922 | 686 | Gene3D | - | 126 | 231 | IPR015300 | - | |
Cma02g00922 | 686 | SMART | B3_2 | 129 | 231 | IPR003340 | GO:0003677 | |
Cma02g00922 | 686 | Pfam | Auxin response factor | 255 | 333 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cma02g00922 | 686 | CDD | B3_DNA | 127 | 229 | IPR003340 | GO:0003677 | |
Cma02g00922 | 686 | SUPERFAMILY | CAD & PB1 domains | 569 | 651 | - | - | |
Cma02g00922 | 686 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 19 | 673 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cma02g00922 | 686 | MobiDBLite | consensus disorder prediction | 363 | 419 | - | - | |
Cma02g00922 | 686 | ProSiteProfiles | B3 DNA-binding domain profile. | 129 | 231 | IPR003340 | GO:0003677 | |
Cma02g00922 | 686 | MobiDBLite | consensus disorder prediction | 518 | 557 | - | - | |
Cma02g00922 | 686 | MobiDBLite | consensus disorder prediction | 521 | 557 | - | - | |
Cma02g00922 | 686 | Pfam | AUX/IAA family | 621 | 653 | IPR033389 | - | |
Cma02g00922 | 686 | Pfam | AUX/IAA family | 565 | 611 | IPR033389 | - | |
Cma02g00922 | 686 | Gene3D | - | 570 | 663 | - | - | |
Cma02g00922 | 686 | ProSiteProfiles | PB1 domain profile. | 575 | 656 | IPR000270 | GO:0005515 | |
Cma02g00922 | 686 | Gene3D | - | 290 | 364 | - | - | |
Cma02g00922 | 686 | PANTHER | AUXIN RESPONSE FACTOR 9 | 19 | 673 | - | - | |
Cma02g00922 | 686 | Pfam | B3 DNA binding domain | 129 | 230 | IPR003340 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g00922 | Cma16g00533 | CCT | |
Cma02g00922 | Cma16g00533 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00922 | Cma-Chr2:5485375 | Cma04g00675 | Cma-Chr4:3436434 | 0 | dispersed | |
Cma04g01901 | Cma-Chr4:9974922 | Cma02g00922 | Cma-Chr2:5485375 | 0 | transposed | |
Cma08g00114 | Cma-Chr8:601684 | Cma02g00922 | Cma-Chr2:5485375 | 0 | transposed | |
Cma15g01291 | Cma-Chr15:8184046 | Cma02g00922 | Cma-Chr2:5485375 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34489 | PF02362 | B3 | 1.50E-21 | CL0405 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g00922 | K14486 | - | csv:101209208 | 1177.16 |