Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00924 ATGGGCTGCACGTCTTCTAAGCGAATTGAGGCCACCGTTGATGTGTACCGGCCGGCTCCGGCGAGCTTTGCAGTGTTCGATATAAACGCCATCGAGGAGCCTTGGGTTAAAGTGGTAGAGGAGCCACAATCGCCAGCATCTCCAGTGAAGGAGGAGAAAGCTGCGATTGTTCCGGTTCCGATCCTTGAGAAGCTCAGTAGTTTGGAATCTGAGACTCCTCACTCTTGGGATGAGGTCAGTAAGGCTCTTGAAGATCTCAAACCCGCCCTTCAACGCGAGCTCCAACCTCCTCCTAAGCCCGTTACTCCCAACCAAGAACCGCCGCCTTCGAAACCCGCCGCAGCCGCCGTCGGTAAACAAGCCCCACGTAAGAGCTCCAGCTTCCACACGGTGGCAGAGCTCGACTCCAAGTTAACGTCTTCCACCAAGCCGGCCGCCAAGTCTTTCAGAAACGGACCGACAAAACCCGAGCCAACAATACCGGAGCCAAGAACCGGCGATTCGGACCGGTTCAGGTCCGTTAAAGAGAACATTTTTCTATTAAGGGACAGACAGGAGAGGGAAAGAGAGGGGCAGAAACCGGTCCGGTACGACCCACTGAGTGAGTTCCCAGAGAAGTGCCCGCCGGGAGGAGCGGAGACGGTGGTGCTGTATACAACATCGTTGAGAGGCGTACGGCGGACGTTCGAGGACTGTAACAGAGTGAAGTCGGTGCTGGAGTTGCAGCAGGTCGTGGTCGATGAGCGTGACGTGGCATTGCACGGTGACTTTTTGAAGGAGCTCAAGGAGTTGCTCGGCGACGAGGCGACCGTGCCGAAAATGTTTGTGAAGGGAAGGTACATCGGAGGGGCAGATGAAATAGTTGCCCTGAACGAGATGGGGAAGCTTCGGAGGCTACTACGGCGAGCGGCGGTGGAGACGGGAGCAGGGCGGCAAGGGTGCGAAGGGTGCGGCGGGGCAAGATTTGTGCCATGTTTGGAGTGTGGAGGAAGCTGTAAAGTGATAATTGGAGAGAGAAAGGAGAGATGTGGAGAGTGTAATGAAAATGGTCTGGCTCGTTGCCCTGCTTGCCATTGA 1077 55.99 MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPWVKVVEEPQSPASPVKEEKAAIVPVPILEKLSSLESETPHSWDEVSKALEDLKPALQRELQPPPKPVTPNQEPPPSKPAAAAVGKQAPRKSSSFHTVAELDSKLTSSTKPAAKSFRNGPTKPEPTIPEPRTGDSDRFRSVKENIFLLRDRQEREREGQKPVRYDPLSEFPEKCPPGGAETVVLYTTSLRGVRRTFEDCNRVKSVLELQQVVVDERDVALHGDFLKELKELLGDEATVPKMFVKGRYIGGADEIVALNEMGKLRRLLRRAAVETGAGRQGCEGCGGARFVPCLECGGSCKVIIGERKERCGECNENGLARCPACH 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5495314 5496885 - CmaCh02G009240.1 Cma02g00924 288675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00924 358 MobiDBLite consensus disorder prediction 123 148 - -
Cma02g00924 358 MobiDBLite consensus disorder prediction 93 110 - -
Cma02g00924 358 MobiDBLite consensus disorder prediction 70 88 - -
Cma02g00924 358 MobiDBLite consensus disorder prediction 67 169 - -
Cma02g00924 358 Pfam Glutaredoxin 215 281 IPR002109 -
Cma02g00924 358 PANTHER GLUTAREDOXIN DOMAIN-CONTAINING CYSTEINE-RICH PROTEIN CG12206-RELATED 1 358 - -
Cma02g00924 358 MobiDBLite consensus disorder prediction 185 200 - -
Cma02g00924 358 Gene3D Glutaredoxin 211 306 - -
Cma02g00924 358 CDD GRX_GRX_like 215 354 - -
Cma02g00924 358 SUPERFAMILY Thioredoxin-like 208 301 IPR036249 -
Cma02g00924 358 MobiDBLite consensus disorder prediction 185 204 - -
Cma02g00924 358 ProSiteProfiles Glutaredoxin domain profile. 203 307 - -
Cma02g00924 358 PANTHER F1N19.7 1 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00924 K17479 GRXCR1; glutaredoxin domain-containing cysteine-rich protein 1 - csv:101208965 578.556
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00924 Cma-Chr2:5495314 Cma15g00532 Cma-Chr15:2478385 1.49E-49 dispersed
Cma02g00924 Cma-Chr2:5495314 Cma14g00316 Cma-Chr14:1401385 1.06E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g159 . . . . . . . . . . Cma02g00924 . Car02g00672 . . . . . . . . . . . . . . . . . . Cone8ag0238 Cone12ag0601 . . . . . . . . . . . . . . . Cmo02g00931 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012144 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00924 Cma_Chr02 FPKM 3.451202 4.424251 39.526752 37.507046 37.465267 34.843971 35.384171 19.475718 16.864429 16.305714