Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00925 ATGGAGGATTCGCGAGATGATCTGTTGTGCATTAGTTACCGGAGTAAGAAGAGGGCTAGAAATAGCAAGAAAGATCATAACAATGGCGGAGTCGTCGTCAACAACAACAATCAAAACCAAAACAACTGCGTTAACAAGAGGACGAGTTTATACGACTTCTTCTGGTCTTTGCTCTTTTCCCTCTCTTGTCTCGTCTGCTTGTTCTATTCCAAGCTCGACCTTGGTTATGGTGATGCTGGAGATTCTTCTTCTGTAAATAGAAGCACTATTTGCCCTAGTCCTGGAAATCAGAAGCTAGATGATTACGCCTATTCATCCATAGCAAATGGAAGCAGTAGTATGAACTCTGGATCGTCTGAACTCAATGTGTCAATGAACTGTAATCAATCCTATGTTCATCACAATTATGCAAATTCAAATTACTCACTTCCAGAGTCAAAGGCATTTGAAGTAGCAGTATTGAATGCACTTGGATATCTATCTTTGATGTGCAAAGTACAACAGCCAGAGAAGAAACCAAACTCAACAGAACATCAGAAAGGTCCTAGTGGCAGAAGTGCTCACCCCACATATCTTAATTTGGACGAATTTCGCAATATTACGATGAAAGATAAAGAAGGGCGCAAAGAAGAGACCTTAGTCGATGCTGTGATTGAACATTATTCTTCTAATTTCAAGGAATTCAATTTGTCTGGCAGTTTGAGCTATCCAACGGAGACATGGCCTAAATTGGGAAACTTTGTTGCTGCCAATGTAAAACATGCTCAAGTCTTCAAGCTTCCTGAACCAAAATGGTTTAACTGCACAATGAGTATAGTAGAGGTTTATGGTGTGGATGTCATGGAGAGGATGCTTGAAGATCTCTCTCCTAATTCAACCGTGTCGACTTCTTCAAAATCAGATGCTGGCTCAGTTAATGAGATAGACGACGATGAAATTAACTTATCGACTACCGGTGCATGGAGAGAAAGTATGGATGATCAGGCAAGTCTTGCTTTAGAGGTTGCAAAAGTTCCCACGAACGTTAATAAGTTTCCTAATCCTGTAACTGAAGCTAAACAACAGCTGAACGGTAGAATACCTGGTGACACTGTCCTGAAGATCTTGATGCAGAAGAGTACCGAAGAATTGAACCGACGACAAGGGAAACTTCTACCGGATCTCGAAAAAGAGATGGCTAGAATGTCATTTCTTCTGGAGAATACTAAATTAGGATCTCATGAAATAGCTCAATTCAAATCATGGAAAACAGCTGCTACATCGCTAATGAATGAATTGGCCAGAGACAATATACTCAGCTTAGATATTGAAAAAATTGCAAGCAACCAAGCCAAGCTGGCAAGTAAAGGACTGGCAGTGCTAGCCGTGAGTTTTCTTTTCATGTGCACTGCAACTCTGAGGCTACTATCAGCTAAAATTCTAAAGTTTTTTGGTGACTGCCAATCCGGCAAGGCGGGCTCGGCGAGTAGTGGTTGGGTATGGATACTTGTTAGCAGCATGGTGACGTTCTAG 1512 41.34 MEDSRDDLLCISYRSKKRARNSKKDHNNGGVVVNNNNQNQNNCVNKRTSLYDFFWSLLFSLSCLVCLFYSKLDLGYGDAGDSSSVNRSTICPSPGNQKLDDYAYSSIANGSSSMNSGSSELNVSMNCNQSYVHHNYANSNYSLPESKAFEVAVLNALGYLSLMCKVQQPEKKPNSTEHQKGPSGRSAHPTYLNLDEFRNITMKDKEGRKEETLVDAVIEHYSSNFKEFNLSGSLSYPTETWPKLGNFVAANVKHAQVFKLPEPKWFNCTMSIVEVYGVDVMERMLEDLSPNSTVSTSSKSDAGSVNEIDDDEINLSTTGAWRESMDDQASLALEVAKVPTNVNKFPNPVTEAKQQLNGRIPGDTVLKILMQKSTEELNRRQGKLLPDLEKEMARMSFLLENTKLGSHEIAQFKSWKTAATSLMNELARDNILSLDIEKIASNQAKLASKGLAVLAVSFLFMCTATLRLLSAKILKFFGDCQSGKAGSASSGWVWILVSSMVTF 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5497142 5500149 - CmaCh02G009250.1 Cma02g00925 288676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00925 503 PANTHER MEMBRANE PROTEIN CH1 RELATED 38 208 IPR045120 GO:0016020
Cma02g00925 503 PANTHER MEMBRANE PROTEIN CH1 RELATED 210 502 IPR045120 GO:0016020
Cma02g00925 503 PANTHER SUN DOMAIN-CONTAINING PROTEIN 5 210 502 - -
Cma02g00925 503 MobiDBLite consensus disorder prediction 18 38 - -
Cma02g00925 503 Pfam Sad1 / UNC-like C-terminal 218 275 IPR012919 -
Cma02g00925 503 PANTHER SUN DOMAIN-CONTAINING PROTEIN 5 38 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00925 - - - mcha:111026162 505.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00925 Cma-Chr2:5497142 Cma09g01292 Cma-Chr9:8927228 1.80E-43 dispersed
Cma15g01294 Cma-Chr15:8199287 Cma02g00925 Cma-Chr2:5497142 2.33E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g155 . . . . . . . . . . Cma02g00925 . Car02g00673 . . . Cpe05g00787 . . . . . . . . . . . . . . . . . . . Csa05g00188 . . . . . . . . . . . Cmo02g00933 . . . . . . . . . . . . . . Cla01g00171 Cam01g0175 Cec01g0173 Cco01g0176 Clacu01g0171 Cmu01g0169 Cre09g2336 Lsi09g00159 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012901 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 0 0 0 1 1 1 1 1 1 0 1 3 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00925 Cma_Chr02 FPKM 0.0 0.0 0.0 0.0 0.443815 0.0 0.372432 0.220762 0.228044 0.0