Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00930 ATGGCGTCTCTACTGCAAGAAACATCCCAAAAAGTCATCACGCCGGAGATCCTCCGCTCTGCCGCCAAACAATCACAGCGTTGCCTCGTTGTCCCAGTCCGCCTTCGCCGTGCCATCAAGAAGTACCTTCGAGAGCAAGAAGTGCCGCACCTGAAGAGGAAGGTGCTGAGGCTGTCTGACTCATTCAGTGGCATCAAGGATGTTAATCTGCAGCTGGCAGCAACCACTTCGAAGGAGCTTGTTGAAGATCCTTTGAAATCGGTAGCGCAGTCCAAGCGTTGGAAGATTAAGAGCTGCTATGGTGATATTGGGTTTCAGTACAGAGATGACGAGACGATTGCTTATGTCGCCTCCCGAATGCCTGCTGTTTTCTCTGCGTGCTATAGAGTTCTTAACGAGGTTCGTAGAAGACTACCTGATTTCTCTCCATCTAGTGTATTGGATTTTGGTGCTGGCACTGGTTCAGCTTTCTGGGCTCTGCGAGAAGTCTGGCCACACTCTGTAGAGAAAGTTAATATAGTAGAACCATCACAATCAATGCAACGTGCTGGACGGAGTTTGATACAAGGCCTAAAGAACTTGCCGCTTATTCATGGTTATGACAGCATTCAGGCGCTTAACAAAGATATTAGTAAGTCAGAGAGAGAACATGACCTTGTCATTGCATCTTATGTACTCGGAGAAATACCGTCACTGAAGGACAGGGTAACCATAGTACGCCAGCTTTGGAATCTTACGAAAGATGCTCTGGTGTTAGTTGAACCTGGAACACCACATGGATCAAATATCATATCTCAAATGCGATCTCACATATTGTGGATGGAAAAAAGAAAATGGCGTAAACATGAAAACAACAAAAATATAGCTTCTAAGGACTTGATTACTCAAAAGTGCGGTGCATATGTAGTTGCTCCTTGTCCTCATGATGGAATATGTCCATTAGTGAATACGGGAAAGTACTGCCATTTTGTTCAGCGATTGGAGAGGACATCAACGCAAAGAGCTTACAAGCGCGCCAAGGGTGAATCCTTGAGAGGTTTTGAGGACGAGAAGTTTTCTTTCGTTGTATTCAGGCGTGGGCAACGTCCTCGGGAACCATGGCCTCTAGACGGCATGAAGTTTGAGACACTAAAGGAACAGCATGCCAAAAGAAATCCAGAAGACCTAGAGATTGACTATGAGGACCTAATAAAGTTGAACACACAAGATATTGTTCCATACCAAGAAGTGGATCCAGTTACATATGATTCTGATGTCATTGAAACTGAAATTCTTGATGATGGAGAAGAAGAGGGAGAGGAAGAACAAGGAGAATCGGCACTTGCTGATTTCGGTGGTGGTTGGGGCAGGATTTTATTTTCACCAATTCGAAGGGGCAGGCATGTATCGATGGATATTTGTCGATCGACAACGCGGGATGCCTCAGAGGGCTCATTTGAGCGAGTTGTTGTCACACAGAGTAAGAATCCTACTTTACATCACCAAGCTCGAAGGTCAGTTTGGGGTGATTTATGGCCTTTTTGA 1524 45.34 MASLLQETSQKVITPEILRSAAKQSQRCLVVPVRLRRAIKKYLREQEVPHLKRKVLRLSDSFSGIKDVNLQLAATTSKELVEDPLKSVAQSKRWKIKSCYGDIGFQYRDDETIAYVASRMPAVFSACYRVLNEVRRRLPDFSPSSVLDFGAGTGSAFWALREVWPHSVEKVNIVEPSQSMQRAGRSLIQGLKNLPLIHGYDSIQALNKDISKSEREHDLVIASYVLGEIPSLKDRVTIVRQLWNLTKDALVLVEPGTPHGSNIISQMRSHILWMEKRKWRKHENNKNIASKDLITQKCGAYVVAPCPHDGICPLVNTGKYCHFVQRLERTSTQRAYKRAKGESLRGFEDEKFSFVVFRRGQRPREPWPLDGMKFETLKEQHAKRNPEDLEIDYEDLIKLNTQDIVPYQEVDPVTYDSDVIETEILDDGEEEGEEEQGESALADFGGGWGRILFSPIRRGRHVSMDICRSTTRDASEGSFERVVVTQSKNPTLHHQARRSVWGDLWPF 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5531103 5535549 + CmaCh02G009300.1 Cma02g00930 288681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00930 507 Gene3D Vaccinia Virus protein VP39 100 292 IPR029063 -
Cma02g00930 507 Pfam Mitochondrial small ribosomal subunit Rsm22 290 506 IPR015324 GO:0006412|GO:0008168
Cma02g00930 507 Pfam Mitochondrial small ribosomal subunit Rsm22 111 274 IPR015324 GO:0006412|GO:0008168
Cma02g00930 507 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 128 270 IPR029063 -
Cma02g00930 507 PANTHER 37S RIBOSOMAL PROTEIN S22 99 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00930 - - - csv:101205106 893.264
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00930 Cma15g01302 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01302 Cma-Chr15:8220029 Cma02g00930 Cma-Chr2:5531103 7.87E-87 transposed
Cma15g01301 Cma-Chr15:8217754 Cma02g00930 Cma-Chr2:5531103 1.05E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g204 . . . . . . . . . . Cma02g00930 Cma15g01302 Car02g00679 Car15g01173 . . Cpe05g00781 . . . . . . . . . . . . . . . . . . . Csa05g00182 Chy09g01314 . . . . . . . . . . Cmo02g00939 Cmo15g01370 . . . . . . Bhi12g00105 . . . . . . Cla01g00162 Cam01g0168 Cec01g0166 Cco01g0169 Clacu01g0164 Cmu01g0163 Cre09g2343 Lsi09g00154 . . Cme09g01863
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011578 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00930 Cma_Chr02 FPKM 13.429371 15.469827 18.303612 21.816008 23.566126 26.237751 23.534071 25.00058 24.914059 23.579819