Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00931 ATGGATTTGATTTACTGCGAGGAGGAGATTGAAAGATTCTATGATACTCGTGAGGAGATCTCCTCTGTTTCTGATTGGGGATCTGATTGCTCTGAGAACTGTAGCACAAGTTTTGGGGATGATAGAGATGTTCCTGAAAATTTCGGATATGGCGGATGGATAAGAAACTTGGAAAGTGTTTATGAACGCAGAAACAAATTCTTCCAGTGGATGAGTTTGGATTTGGATTTGGAGAATTCTGATAACAAAGATGAAGAGGAAGGGGTTTCATTTGGGAGGGGTTATCGTGATCGAATATTGGAAGATTGTGGAACGGTATTGCGACTTTCGGGTTCTGAAGGGGAGTTATCTTCAAGTTTTACCATGTCTTCCATGTCGGAAGAAGCTCCAGAATCATCAGGAAATGTTTCTGTGGAGGAAAGTTATGGTTATACTATCAGGAATTTGGACAATGGGACTGAGTTTATTGTGGATTGTTTCAGTCAAGATGGAATGTTGAACATGTTACGCGAAGTCGGTTCGAACCGATCGTTCAGTTTTGATGAATTTGAGAGAAACATTGGGCAGACTCCCTTGGTTCAGGAACTCTTCCGCAAAAATGTGGAAAAGGCTAGGCCTATAGTCAATGTCAGGAAAGAGGTAAAGAAGGGTTGGCTGAGAAAATTGGGTGCGGCGGCGTGTATAGTTGACAACAGGGAGGGTGCAGTGAAGCATGACAATCTCAATTCATCGTCTAAGGCTGGGATGCAACAAGTTCGTGTTCATCCATATAAAAAGCAAGCCAAGGATTTATCATCCCTTTTTGTGGGACAAGAATTTGAAGCACATAAAGGACCAATTTCTACAATGAAGTTCAGTTTTGATGGAAGATACTTGGCTACTGCAGGCGAAGATCGTGTCGTGCGTGTATGGCAGGTCATTGAAGATGTGAAAATTGATAATTTCAACCTTCACAATGTTGATCCTTCCTCTATGTACTTCACAACGAATCATTTGTCCAAGCTAGACCCCTTGGATGTGAAAGAGACCGTAGGCAAGACAAAATTGAAGAGATCATCAAGTACAGCCTGTGTAATTTTTCCACCAAATCTATTTAGGATATTGGAGAAACCGTTGCACGAGTTCTCGGGACACAGCGGTGAGGTCTTGGATCTATCTTGGTCGAAGAAAGGGCTTCTGCTGTCGTCTTCTGTCGATAAGACTGTACGTCTTTGGCAGCTGGGATGCGACACGTGCATAAGAGTTTACTGTCATAATAACTACGTAACCTGTGTAAGTTTCAACCCTCTAGATGAAAATCATTTCATAAGTGGCTCGATAGATGGTAAAGTTCGGATCTGGGAAGTTCTTGCTTGTCAAGTCGTTGATTATATCGATACTCGTGAGATAGTGAGTGCTGTCTGTTACAGACCGGATGGAAAGGGAGGAATCGTCGGGTCCATGACTGGAAACTGTCGTTTCTATAATATTATAGATAATCGGTTGGAGCTCGATGCTCAAATATGCTTAAATGGCAAAAAGAAGTTGCCTGGGAAGAGAATAATTGGTTTTGAGTTTTCTCCTAGCGACCCGAGTAAACTAATGGTCTGCTCTGTTGATTCGCCGGTTCATATAATTTCTGGGGGTGATATCATTTGCAAGTTCAAGGGTCCTCGAAATGGTGGAAACAAGATGTCTGCTTCTTTTACCTCTGATGGAAAGCATATTGTTTCAGCCAGTGAAGAAAACATCTATGTTTGGAACTACAATTGTAAGGACAAAGCGTCTCGGAAAAAGAAAATTTGGTCATCTGAAAGTTTCTTTTCTCATAATGCGTCGATAGCTATACCTTGGTCTGGTGTGAAAATCACACCCGAATCCCCCCTGTCCCCAGCACGAGTTTGTGTTACAGCAGAAAGTATCCCTGAAATGGAGCCTAAGTATCCAAATGACGATGGTGATAGCGAACACAAGGTTCCATCATCGTCACCGGATTGCTTCTCTCTAAGTCGCAATCTTTTTCCCGAGTTGCTCAAAGGAACTGCAACTTGGCCAGCGGAGAAACTCCATGATTCCAGCTCAATGGCACCTTCACCTTCCATGTGCAAGACTGAGTTCAAGTTTTTGAAGAATGCCTGCCAAAGCATGCTTAGCTCTCCACACATGTGGGGTCTTGTGATTGTTACCGCTGGATGGGATGGACGAATCCGAACATTTCTCAACTATGGTTTACCCGTTCGGTTATGA 2226 42.9 MDLIYCEEEIERFYDTREEISSVSDWGSDCSENCSTSFGDDRDVPENFGYGGWIRNLESVYERRNKFFQWMSLDLDLENSDNKDEEEGVSFGRGYRDRILEDCGTVLRLSGSEGELSSSFTMSSMSEEAPESSGNVSVEESYGYTIRNLDNGTEFIVDCFSQDGMLNMLREVGSNRSFSFDEFERNIGQTPLVQELFRKNVEKARPIVNVRKEVKKGWLRKLGAAACIVDNREGAVKHDNLNSSSKAGMQQVRVHPYKKQAKDLSSLFVGQEFEAHKGPISTMKFSFDGRYLATAGEDRVVRVWQVIEDVKIDNFNLHNVDPSSMYFTTNHLSKLDPLDVKETVGKTKLKRSSSTACVIFPPNLFRILEKPLHEFSGHSGEVLDLSWSKKGLLLSSSVDKTVRLWQLGCDTCIRVYCHNNYVTCVSFNPLDENHFISGSIDGKVRIWEVLACQVVDYIDTREIVSAVCYRPDGKGGIVGSMTGNCRFYNIIDNRLELDAQICLNGKKKLPGKRIIGFEFSPSDPSKLMVCSVDSPVHIISGGDIICKFKGPRNGGNKMSASFTSDGKHIVSASEENIYVWNYNCKDKASRKKKIWSSESFFSHNASIAIPWSGVKITPESPLSPARVCVTAESIPEMEPKYPNDDGDSEHKVPSSSPDCFSLSRNLFPELLKGTATWPAEKLHDSSSMAPSPSMCKTEFKFLKNACQSMLSSPHMWGLVIVTAGWDGRIRTFLNYGLPVRL 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5536316 5540677 - CmaCh02G009310.1 Cma02g00931 288682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00931 741 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 449 IPR001680 GO:0005515
Cma02g00931 741 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 306 IPR001680 GO:0005515
Cma02g00931 741 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 449 - -
Cma02g00931 741 PRINTS G protein beta WD-40 repeat signature 292 306 IPR020472 -
Cma02g00931 741 PRINTS G protein beta WD-40 repeat signature 393 407 IPR020472 -
Cma02g00931 741 PRINTS G protein beta WD-40 repeat signature 435 449 IPR020472 -
Cma02g00931 741 PANTHER WD REPEAT DOMAIN 44 6 741 IPR040324 -
Cma02g00931 741 Gene3D - 257 607 IPR015943 GO:0005515
Cma02g00931 741 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 741 - -
Cma02g00931 741 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 306 - -
Cma02g00931 741 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 375 407 - -
Cma02g00931 741 ProSiteProfiles Trp-Asp (WD) repeats profile. 375 407 IPR001680 GO:0005515
Cma02g00931 741 Pfam WD domain, G-beta repeat 370 405 IPR001680 GO:0005515
Cma02g00931 741 Pfam WD domain, G-beta repeat 271 304 IPR001680 GO:0005515
Cma02g00931 741 Pfam WD domain, G-beta repeat 411 447 IPR001680 GO:0005515
Cma02g00931 741 SUPERFAMILY WD40 repeat-like 269 731 IPR036322 GO:0005515
Cma02g00931 741 SMART WD40_4 368 406 IPR001680 GO:0005515
Cma02g00931 741 SMART WD40_4 266 305 IPR001680 GO:0005515
Cma02g00931 741 SMART WD40_4 450 489 IPR001680 GO:0005515
Cma02g00931 741 SMART WD40_4 541 581 IPR001680 GO:0005515
Cma02g00931 741 SMART WD40_4 496 540 IPR001680 GO:0005515
Cma02g00931 741 SMART WD40_4 409 448 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00931 - - - csv:101204856 1298.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00931 Cma15g01305 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00931 Cma-Chr2:5536316 Cma02g01133 Cma-Chr2:6698172 0 dispersed
Cma15g01305 Cma-Chr15:8225461 Cma02g00931 Cma-Chr2:5536316 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g208 . . . . . . . . . . Cma02g00931 Cma15g01305 Car02g00680 Car15g01175 . . Cpe05g00780 . . . . . . . . . . . . . . . . . . . Csa05g00028 Chy09g01316 . . . Bda07g01942 . . . . . . Cmo02g00940 Cmo15g01372 . . . . . . Bhi12g00103 . . . . . Lcy12g1541 Cla01g00160 Cam01g0166 Cec01g0164 Cco01g0167 Clacu01g0162 Cmu01g0161 Cre09g2345 Lsi09g00152 . . Cme09g01865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009425 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 4 3 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00931 Cma_Chr02 FPKM 12.771438 14.001679 13.685217 12.940142 8.967607 8.047517 9.239998 19.071829 17.535738 18.600416