Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00934 ATGGTTGATGTTGCTGATAAATTAGCCTATTTCCAAGCGATTACAGGCTTAGAGGATCCCGAAATCTGCACCGAAATCCTTTCCGCTCACGGTTGGGACCTCGAACGCGCTGTTTCTTCTTTTACTTCCACCACTTCGGAATCCTCTGCTTCTGCCGCCGCTGATGATGGTGGTGGCGACGCACATTTGGACCCTGCGACGCGACAAATGCTCGAGAGATCGGAACCGCAACAAAATGCCGCTCCGCCCCCGAGTTTTGCTTGGAAAATCATCACGCTTCCGATTTCTGTGATTTCTGGTAGTTTAGGGCTTGTTTCGGGTGCAATTGGTCTGGGATTATGGGCTGCTGGTGGTATTCTTTCGTACTCTCTTGGCGTGATTGGTCTGGGGTCCGGTTCTGGCCGGAACGGTGAGTCGTCGGCCCGGTTGGTTTCTGTTTCTGCTGCTACATCGGAGGCTGTTGATTTTGTGTCCGCGTTTGAGAGGGATTTTGGGACGACTAGACCGAATTTTGTGGGGGAAGGGTTCATGGACTCGTTGCAGCGTTCTAGGAATGCCTTTAAGCTTTTGTTTGTTTACTTGCACTCTCCTGATCATCCGGATACGCCGTTGTTCTGCGAGAGGACCTTGTGTTCGGAGACTGTTGCAGCGTTTGTGAACGAGAACTTTGTTTCGTGGGGAGGGAGTATTCGGGCTAGTGAAGGTTTTAAGATGAGTAATAGCTTGAAAGCTTCAAGGTACCCTTTTTGTGCTGTGGTTATGGCAGCTACAAATCAGAGGATCGCACTGCTTCAGCAGGTTGAGGGACCAAAAACTGCTGAAGAAATGCTAGTGATTCTACAAAGAGTTCTGGAAGAAAGTGCTCCCATTCTGGTTTCTGCAAGGATCGATGCAGAAGAAAGAAGAAATAACATGCGATTGAGGGAGGAACAAGATGCTGCTTACAGAGCAGCACTTGAAGCAGATCAAGCCAGGGAACGACAAAGAAGGGAGGAGCAAGAGCGTCTGGAAAGGGAAGCTGCTGAAGCTGAGAGAAAAAGGAAAGAGGAAGAAGAGGCTCGTGAGAGAGCTGTTCGTGAAGCGGCAGAAAGAGAGGCTGCTTTAGCTAGAATGCGCCAAGAGAAAGCAATGTCACTTGGCGCCGAACCTGAAAAGGGGCCTAATGTTACACAAGTATTGGTGCGGTTCCCTACTGGAGAACGCAAGGAAAGGAGATTTCACAGTACCGCTTCGATCAAAACTCTCTACGACTTTGTCGACTCCTTGGGTTGTCTGGACATTGATAGTTATAATCTGGTCTCAAACTTCCCTCGAGTTGTTTATGGCACCGAGAAGCTCTCAATGCCCTTGAAAGAAGCTGGACTGCATCCTCAGGCCAGTCTTTTTGTGGAGCTAACTTCGTGA 1404 49.22 MVDVADKLAYFQAITGLEDPEICTEILSAHGWDLERAVSSFTSTTSESSASAAADDGGGDAHLDPATRQMLERSEPQQNAAPPPSFAWKIITLPISVISGSLGLVSGAIGLGLWAAGGILSYSLGVIGLGSGSGRNGESSARLVSVSAATSEAVDFVSAFERDFGTTRPNFVGEGFMDSLQRSRNAFKLLFVYLHSPDHPDTPLFCERTLCSETVAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMAATNQRIALLQQVEGPKTAEEMLVILQRVLEESAPILVSARIDAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERLEREAAEAERKRKEEEEARERAVREAAEREAALARMRQEKAMSLGAEPEKGPNVTQVLVRFPTGERKERRFHSTASIKTLYDFVDSLGCLDIDSYNLVSNFPRVVYGTEKLSMPLKEAGLHPQASLFVELTS 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5553181 5559981 + CmaCh02G009340.1 Cma02g00934 288685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00934 467 Coils Coil 316 374 - -
Cma02g00934 467 Gene3D - 2 52 - -
Cma02g00934 467 CDD UBX 392 464 - -
Cma02g00934 467 CDD UBA_FAF 11 38 - -
Cma02g00934 467 MobiDBLite consensus disorder prediction 45 64 - -
Cma02g00934 467 Gene3D - 388 466 - -
Cma02g00934 467 Pfam UBX domain 385 464 IPR001012 GO:0005515
Cma02g00934 467 SMART 45neu3 155 281 IPR006577 -
Cma02g00934 467 Pfam UBA-like domain 6 43 - -
Cma02g00934 467 PANTHER FAS-ASSOCIATED PROTEIN 1 467 - -
Cma02g00934 467 SUPERFAMILY Ubiquitin-like 348 464 IPR029071 -
Cma02g00934 467 Gene3D Glutaredoxin 139 291 - -
Cma02g00934 467 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 10-LIKE 1 467 - -
Cma02g00934 467 SUPERFAMILY Thioredoxin-like 150 294 IPR036249 -
Cma02g00934 467 SMART ubx_3 383 465 IPR001012 GO:0005515
Cma02g00934 467 ProSiteProfiles UBX domain profile. 385 463 IPR001012 GO:0005515
Cma02g00934 467 CDD UAS 171 286 - -
Cma02g00934 467 MobiDBLite consensus disorder prediction 321 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00934 K18726 FAF2, UBXD8; FAS-associated factor 2 - csv:101203982 659.448
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00934 Cma15g01308 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00934 Cma-Chr2:5553181 Cma16g01003 Cma-Chr16:7729059 9.34E-13 dispersed
Cma04g02821 Cma-Chr4:18875343 Cma02g00934 Cma-Chr2:5553181 3.30E-13 transposed
Cma13g00873 Cma-Chr13:7120401 Cma02g00934 Cma-Chr2:5553181 4.28E-44 transposed
Cma15g01308 Cma-Chr15:8243397 Cma02g00934 Cma-Chr2:5553181 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g218 . . . . . . Bma07g00995 . . . Cma02g00934 Cma15g01308 Car02g00683 Car15g01178 . . Cpe05g00779 . . . . . . . . . . . . . . . Cone12ag0544 . . . Csa05g00177 Chy09g01319 . Blo03g00816 . . Bda09g00683 Bpe08g00875 . . . . Cmo02g00943 Cmo15g01375 . . . . . . Bhi12g00100 . . Lac11g1941 Hepe06g1448 . Lcy12g1536 Cla01g00157 Cam01g0162 Cec01g0159 Cco01g0164 Clacu01g0158 Cmu01g0157 Cre09g2349 Lsi09g00149 . . Cme09g01868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006818 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00934 Cma_Chr02 FPKM 11.908695 11.142103 18.554646 19.015675 12.756313 10.806939 11.487957 14.46602 16.1842 16.10137