Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00935 ATGAGTTGCGGTTCGGATTTGATGTCTGGGAATTCTGAGGCTGATGATTTTGATATTTTAGACAAGGATCCAACTGGACGATATATACGGTACGATGAGATCTTGGGTAAAGGGGCATTCAAGACAGTATTCAAAGCTTTCGATAAAGCTGGTGGAATCGAAGTTGCTTGGAGCCAAGTGGACATTGAAGATGTTTTGCAGTCACCTGAACAACTTCAAAGATTGTATTCTGAGGTTCATTTGCTGAAGTCACTGAAACATGAGAATATTATCAAGTTCTTTAGTTACTGGGTTGATGATAACACTAAGACTATCAACATGATTACAGAATTGTTCACTTCTGGGAGTTTGAGGCAATATCGAAAGAAGCACAGGAAAGTGGACTTGAAGGCTTTCAAGAACTGGGCAAGGAAGATACTGCGGGGTTTAACGTATTTGCACGGTCATGATCCTCCAATTATTCACAGGGATTTGAAATGTGATAATATATTTGTCAATGGAAATACTGGAGAAGTTAAAATCGGAGATCTCGGATTGGCGATCGTCTTGCAGCAGCCGACTGCCCGAAGTGTAATTGGCACTCCAGAGTTCATGGCTCCAGAGCTCTATGATGAGGACTACAATGAACTTGTTGATATCTATTCTTTTGGCATGTGCATGTTGGAAATTGTTACTTGTGAATACCCATATAATGAGTGCAAAAATTCTGCCCAAATATTCAAGAAGGTTACTTCTGGTGTAATGCCTGCTTCCCTTGAAAAAGTGTTGGATCCTCAAGTTAAGCAGTTCATAGAGAAGTGTCTGGTTCCAGCATCCATGAGACTACCTGCAAGTGAACTCTTGAAAGATCCATTCCTTGCAACTGAAAATCGCAAGGATCATAGTTCTGAACGTTCAATGTTATTGAATGCGCAGTTCGAATCAGTAAATCCTCCTCTGCTGGATACTAATCCAATGGACATGGATCACAATTGCAGCAAACTCTCAGGCTCAGTGGCCTCATCTATCGAAAGCAATAATGAAATTTCTCACTTTTCAACTCAGGAACTCAAGACGCTCACCGAGAACAATGAATTGACACTGAAAGGGGACATGACTGATCATAATTCAATTTCGTTCCATTTGCGCATTGCCGAATTATCTGGTCAATCTAAGAATATCCATTTTGCGTTCTTTCTTGATTCCGATACTGCGTTGGCTATTGCTTTGGAGATGGTTGAACAACTTGAACTGTCAAATGAAGATGCTACCATCATAGCACAACTGATAGATGAATTAATTGCTAAGTTTGTTCCCAGTTGGCAACAATGTACAAATTTTTGTGACGGACTAATTACTGAACATAGTTCTTCTGAAACCGAAGAGGATAAGGCCTTCAGTCCTCCTCTCTTCTCTGAGATGGTACTGTCTTCTCCCTTGGTGGGTGCCGGTAGGAAAACTCTGACAGAATTGGCGGAGGTGGAACATCAAGAAAACCAGCAGACAATCATCTCATGTGCATCTCTGGACTACAACCACTCAACCATCTCAGATTACAGCATGGGAAAAGGAGGATCAGAGTGTGGTGACTTCAGCCACCCCGAATGCGACAAAGCTTTTATAAGCAGCGGCAGCGGAACCAGTGATTTAGATGCTGTTGGATCTGTTTCAACTATGTTCGATTTCGCCAAACCGTCCCTAATCTCCTCCTGCTCAGGAATGTCGAAAGAATTGAGCTTGTCTAACTTCTCCAATTTTTCTGTGGAAGAAAGAGACCAGCATGATGAACTGAAGATGGAGATTGATGCCATTGACATGCAGTACCACCAGTGCCTTTGTGAACTGTCGAGAATGAGAGAGGAAGCTATTGAAAGTGCCAAGACGAGGTGGATGTCAAAGAAGAAAGGTGCGGCTATTTGA 1899 42.07 MSCGSDLMSGNSEADDFDILDKDPTGRYIRYDEILGKGAFKTVFKAFDKAGGIEVAWSQVDIEDVLQSPEQLQRLYSEVHLLKSLKHENIIKFFSYWVDDNTKTINMITELFTSGSLRQYRKKHRKVDLKAFKNWARKILRGLTYLHGHDPPIIHRDLKCDNIFVNGNTGEVKIGDLGLAIVLQQPTARSVIGTPEFMAPELYDEDYNELVDIYSFGMCMLEIVTCEYPYNECKNSAQIFKKVTSGVMPASLEKVLDPQVKQFIEKCLVPASMRLPASELLKDPFLATENRKDHSSERSMLLNAQFESVNPPLLDTNPMDMDHNCSKLSGSVASSIESNNEISHFSTQELKTLTENNELTLKGDMTDHNSISFHLRIAELSGQSKNIHFAFFLDSDTALAIALEMVEQLELSNEDATIIAQLIDELIAKFVPSWQQCTNFCDGLITEHSSSETEEDKAFSPPLFSEMVLSSPLVGAGRKTLTELAEVEHQENQQTIISCASLDYNHSTISDYSMGKGGSECGDFSHPECDKAFISSGSGTSDLDAVGSVSTMFDFAKPSLISSCSGMSKELSLSNFSNFSVEERDQHDELKMEIDAIDMQYHQCLCELSRMREEAIESAKTRWMSKKKGAAI 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5561683 5565770 + CmaCh02G009350.1 Cma02g00935 288686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00935 632 SMART serkin_6 29 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00935 632 Gene3D Phosphorylase Kinase; domain 1 13 110 - -
Cma02g00935 632 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 627 - -
Cma02g00935 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Cma02g00935 632 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 373 428 IPR024678 GO:0004674|GO:0005524
Cma02g00935 632 ProSiteProfiles Protein kinase domain profile. 29 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00935 632 SUPERFAMILY Protein kinase-like (PK-like) 22 286 IPR011009 -
Cma02g00935 632 PANTHER WNK KINASE 11 627 - -
Cma02g00935 632 Pfam Protein kinase domain 32 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00935 632 Gene3D Transferase(Phosphotransferase) domain 1 112 293 - -
Cma02g00935 632 CDD STKc_WNK 27 286 - -
Cma02g00935 632 Gene3D - 369 460 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00935 Cma15g01310 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00935 Cma-Chr2:5561683 Cma13g00858 Cma-Chr13:7061331 1.63E-159 dispersed
Cma14g02124 Cma-Chr14:14602846 Cma02g00935 Cma-Chr2:5561683 0 transposed
Cma15g01310 Cma-Chr15:8251622 Cma02g00935 Cma-Chr2:5561683 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68351 PF00069 Pkinase 2.40E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00935 K08867 - csv:101207748 1037.33