Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00937 ATGGTCATTCTTGGTAGAGGTTTAGGGTTTAACCACAAGCAATTCTTCTCCTTCCCCAAGTTTTTCTTTCTCCGTCCTTTCATGGCTACTTCTCCTGTCGCTTCCTATTCCACTGGTTCCCCTGGTGGCGCCGTTTCGGTGAAGCGAGTGGGGACTCACCATGGTAGCTTCCATTGCGATGAGGCGCTTGGCTGCTTCATGATTCGCTTGACGCAGAAGTTCTCTAATGCTCAGATTGTTCGAACCCGTGATCCCCAGGTATTAGAAGGTCTTGATGCAGTTCTTGATGTTGGGGGCGTGTATGATCCAAGTCACGATCGTTATGATCATCATCAAAAGGGGTTTGAAGAAGTTTTTGGCCATGGATTCAACACTAAGCTCAGCAGCGCTGGTCTTGTTTATAAGCATTTTGGGAAGGAGATTATTGCAAAGGAGCTTCAAGTTGATGAAGGCCACCCAGATGTGCAAAGGCTATTTTTGGCTGTATACAAAAGTTTCATGGAGGGCATCGATGCTATAGATAACGGTATCAATCAGTATGATACAGACCAGCCACCAAAATATGTGAATAACACACACCTATCTTCAAGGGTGGGGAGATTGAATCTGGACTGGATTGATCCCGATCAATCATCCGAGAATGAGAATAAAGCCTTTGAGAAAGCAATGGCTCTGGCTGGCGGCGAGTTCTTAGATAGTGTTCGGTTTCATGCCAAATCGTGGCTACCAGCAAGGTCGATCGTGATGAGATGTCTTGGAGCAAGACATGATATCGACCCTAGTGGAGAAATAATGGTTTTGACAACATTTTGCCCTTGGAAACTTCATCTATTTGAGCTCGAGACGGAGTTGAAGAACGACAATTTGATCAAATATGTGCTCTATCAGGACGATCGAAGCAAACAGTGGCGAGTGCAGGCAGTGGCAACAGCTCCTGACAGATTCGAGAGTCGCAAGCCTCTGCCTGCTCAATGGCGGGGTTTAAGGGACGAGGAACTCTCAAAAGAGTCAGGGATCCCCGGTTGCGTGTTTGTTCATATGAGTGGCTTTATAGGTGGAAATCAAACTTACGAAGGGGCTATTGCCATGGCGAAGCAAGCATTGAAGCTGTAG 1113 46.63 MVILGRGLGFNHKQFFSFPKFFFLRPFMATSPVASYSTGSPGGAVSVKRVGTHHGSFHCDEALGCFMIRLTQKFSNAQIVRTRDPQVLEGLDAVLDVGGVYDPSHDRYDHHQKGFEEVFGHGFNTKLSSAGLVYKHFGKEIIAKELQVDEGHPDVQRLFLAVYKSFMEGIDAIDNGINQYDTDQPPKYVNNTHLSSRVGRLNLDWIDPDQSSENENKAFEKAMALAGGEFLDSVRFHAKSWLPARSIVMRCLGARHDIDPSGEIMVLTTFCPWKLHLFELETELKNDNLIKYVLYQDDRSKQWRVQAVATAPDRFESRKPLPAQWRGLRDEELSKESGIPGCVFVHMSGFIGGNQTYEGAIAMAKQALKL 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5570810 5573339 - CmaCh02G009370.1 Cma02g00937 288688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00937 370 PANTHER METAL DEPENDENT HYDROLASE - RELATED 29 369 IPR003226 -
Cma02g00937 370 Pfam Uncharacterised protein family (UPF0160) 50 368 IPR003226 -
Cma02g00937 370 PANTHER METAL-DEPENDENT PROTEIN HYDROLASE 29 369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00937 K25877 MYG1; MYG1 exonuclease [EC:3.1.-.-] - csv:101203739 656.366
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g226 . . . . . . . Bma14g00106 . . Cma02g00937 . Car02g00686 . . . Cpe05g00776 . . . . . . . . . . . . . . . . . . . Csa05g00174 Chy09g01323 . Blo03g00809 . Bda07g00147 . . Bpe11g00364 . . . Cmo02g00947 . . . . . . . Bhi12g00096 . . . . . Lcy12g1531 Cla01g00154 Cam01g0159 Cec01g0155 Cco01g0161 Clacu01g0154 Cmu01g0154 Cre09g2352 . . . Cme09g01871
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007612 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 2 2 2 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00937 Cma_Chr02 FPKM 18.160105 19.117794 12.863384 13.521047 37.369377 41.661812 37.03352 19.217062 18.341309 18.709202