Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00946 ATGGAAAGCGACGGATCAAGCTGCCTGCCACTCCCCCCAGATGTGGAGAATCGGATCATCTCCGACCTTCTGAAGGAATCCGAGTCTAATTTGAAAGAAGGCAATCTCCACTATGTTGTTTCTAATCGGTGGTTTAGAAGATGGCAATTATATGTCGGACAGCCTACTGAAGAATTTTCTAGCAAAGATCATTCCTCTGATTCCCAACACTTGAATGTGTCTCCGTTCAACGTTCTAAGACCCGGTCCTATTGATAATTCAGATATAATCAATAACGGAGGTGATTCTGAGAAAAACGAGTTGGAGATGGAAAGATTTTTGGTGGAACGACGGGATTATGTTTTGGTGCCCGGTGAAGTTTGGGAGAAACTTTATGATTGGTATAAAGGAGGGCCACCGTTACCAAGAAAGTTGATATCCCAAGGTGTCACTCAAAAAAAAATTTATGTGGAGGTTTATCTACTTTGTCTAAAATTGATTGATTCCAGGGATGGAAGTGAATCTACCATACGATTGAGCAAGAAGGCCACCATATCTGATCTTCGTGAGAAGGTGTTTGCACTTAAAGGAGTAGAGCAAAAAGAGGCGTGTATATGGGACTACTTCAACAAATGGAAACAATCAGTATTGGATGGGACGAGCCAAACCCTTGAAGAACTAAACTTGCAGATGGATCAACATATCCTCCTTGAAGTTGATGGAATTACTCCTCAGACCGGTATGGATGCCACTCAAAACGAGCTAGCTTTGGTAGCCCTTGAACCTTCATGGTCACCATTGTCAATTGCAGGGGGTGCAGTGATGTCAAATGGACATTCATCCAGTTATGGTAATCAGGGAAGTTCTTTAAGCACATCAGTTTCTGACATGGATGATAGAAATGACATTAGTAGTACTGCAAAGAACAGAAAGAGGGGTGGTTTGACAGGGTTGCAGAATTTAGGAAATACATGTTTCATGAATAGTGCCCTTCAATGCTTAGTTCATACGCCACCTTTTGTAGAATATTTTTTACAAGATTATTCTGAAGAGATCAACTCCGACAATCCTTTGGGAATGCACGGAGTGTTTGCCCTTGCTTTTGGTGAATTGTTGAGGGAATTATGGTTGCCAGGACAAAGCTCAATTGCACCACGTGCATTTAAGGGAAAGTTAGCTCGTTTTGCTCCCCAGTTCAGTGGTTATAACCAGCACGATTCCCAAGAACTTCTTGCATTCTTACTGGATGGTCTGCATGAAGATTTGAATCGTGTTAAGAGGAAACCTTATTTTGAAACAAAGGATTCTGATGGTCGTCCAGATGTAGAAGTTGCGGACGAGTGTTGGAGATACCATAAAGCTCGAAATGATTCTATAATTGTGGATGTTTGTCAAGGTCAATATAAGTCAACATTGGTTTGTCCAGTTTGTAGAAAGATCTCCATTACTTTTGATCCATTTATGTATTTGTCATTGCCGCTACCTTCAACTGTCACCCGCAGTGTGACAGTGAGTGTGTTCTATGGTGACGGTAGTGGTCTTCCAATGCCATACACTGTGACAGTACAAAGACATGATTGCACCAAGGATCTCACCCTTGCATTGGCTACAGCGTGCTGCTTGAAGAGTGATGAAGATCTTCTGCTTGTAGAGGTTTATGATCACAAGATTTACCGATATTTTGATAACCCTCTTGAATTTTTGGCCTCAATTAAAGATGAAGAGTATCTAGTTGCCTTTCGCCTTCCAAAAAGGGAATCTGGAAGACCAAAGCTAGAGATCATTCACAGATCGCTGGAAAAATACTCAACAGACCATTCGAAGGGCTTGGAGAGAAAGCTTTTCGGAACTCCTTTAGTCACATATTTGGGAGAAGAGTTCCATAGTGGAGCTGGCATAAATGCAGCTGTGTCTAAGATCCTCTTTCCCTTGAGAAGAACATACTCTTCAACTGTATCTCATAGTAGCAAAGAAAATGACTTTGTTTTTGAAATTAATGATGAACCAGCCAACTGCAGTCCTCAGTCTGTTTCTAGGAGCCAGTCAATGGACAATGAAGTAGAGGAGACATCTGAAAAAGAGTTATTCTTTCAACTTCTTTTAACCGATGATAGGGGTGTGAGCTGCAAGCCAATTGGCAAGGATTCTGCTATAAAACATGGTCCACTTATAAAGGTTTTCTTGGATTGGACCGACAGAGAACGTAAACTATATGACGTGGGCTACATCGAGGATCTTCCTCCTGTTCACCAGACAAGGTTCATGAAGAAAACACGGCAGGAAGCAACCTCTTTATTTTCATGCTTGGAAGCATTCCTGACTGAAGAACCTTTAGGTCCTGATGATATGTGGTACTGCCCTGTGTGCAAAGAACATGGACAGGCTACAAAGAAGTTAGACTTGTGGAAGTTGCCAGAGATTATTGTGTTTCACTTGAAACGTTTTTCATACCGCAGATACCTTAAAAGAAAACTTGATACCTTTGTTGATTTCCCTATTCACAATCTTGACTTGAGCAAATATGTGAAGAGCAATGATGGAAAATCTTACTTATACAACCTATATGCCATTAGCAACCATAATGGAGGTCTTGGCCGAGGGCACTACACTGCATATTCAAAGCTGTTTTTCATATATCCAGTTAATCAATGA 2631 41.24 MESDGSSCLPLPPDVENRIISDLLKESESNLKEGNLHYVVSNRWFRRWQLYVGQPTEEFSSKDHSSDSQHLNVSPFNVLRPGPIDNSDIINNGGDSEKNELEMERFLVERRDYVLVPGEVWEKLYDWYKGGPPLPRKLISQGVTQKKIYVEVYLLCLKLIDSRDGSESTIRLSKKATISDLREKVFALKGVEQKEACIWDYFNKWKQSVLDGTSQTLEELNLQMDQHILLEVDGITPQTGMDATQNELALVALEPSWSPLSIAGGAVMSNGHSSSYGNQGSSLSTSVSDMDDRNDISSTAKNRKRGGLTGLQNLGNTCFMNSALQCLVHTPPFVEYFLQDYSEEINSDNPLGMHGVFALAFGELLRELWLPGQSSIAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKRKPYFETKDSDGRPDVEVADECWRYHKARNDSIIVDVCQGQYKSTLVCPVCRKISITFDPFMYLSLPLPSTVTRSVTVSVFYGDGSGLPMPYTVTVQRHDCTKDLTLALATACCLKSDEDLLLVEVYDHKIYRYFDNPLEFLASIKDEEYLVAFRLPKRESGRPKLEIIHRSLEKYSTDHSKGLERKLFGTPLVTYLGEEFHSGAGINAAVSKILFPLRRTYSSTVSHSSKENDFVFEINDEPANCSPQSVSRSQSMDNEVEETSEKELFFQLLLTDDRGVSCKPIGKDSAIKHGPLIKVFLDWTDRERKLYDVGYIEDLPPVHQTRFMKKTRQEATSLFSCLEAFLTEEPLGPDDMWYCPVCKEHGQATKKLDLWKLPEIIVFHLKRFSYRRYLKRKLDTFVDFPIHNLDLSKYVKSNDGKSYLYNLYAISNHNGGLGRGHYTAYSKLFFIYPVNQ 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5623467 5634009 + CmaCh02G009460.1 Cma02g00946 288697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00946 876 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 310 325 IPR018200 GO:0004843|GO:0006511
Cma02g00946 876 Gene3D - 2 152 IPR035927 -
Cma02g00946 876 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 845 862 IPR018200 GO:0004843|GO:0006511
Cma02g00946 876 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 9 869 - -
Cma02g00946 876 Pfam DUSP domain 36 139 IPR006615 GO:0004843
Cma02g00946 876 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 9 869 - -
Cma02g00946 876 MobiDBLite consensus disorder prediction 273 293 - -
Cma02g00946 876 SMART dusp 30 142 IPR006615 GO:0004843
Cma02g00946 876 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 309 876 IPR028889 -
Cma02g00946 876 SUPERFAMILY DUSP-like 8 139 IPR035927 -
Cma02g00946 876 Pfam Ubiquitin carboxyl-terminal hydrolase 309 867 IPR001394 GO:0004843|GO:0016579
Cma02g00946 876 Gene3D - 153 237 - -
Cma02g00946 876 ProSiteProfiles DUSP domain profile. 11 139 IPR006615 GO:0004843
Cma02g00946 876 SUPERFAMILY Cysteine proteinases 307 868 IPR038765 -
Cma02g00946 876 Gene3D Cysteine proteinases 292 507 - -
Cma02g00946 876 Gene3D Cysteine proteinases 637 870 - -
Cma02g00946 876 MobiDBLite consensus disorder prediction 273 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00946 - - - mcha:111023427 1475.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00946 Cma06g00538 CCT
Cma02g00946 Cma15g01323 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00533 Cma-Chr1:2748408 Cma02g00946 Cma-Chr2:5623467 0 dispersed
Cma02g00946 Cma-Chr2:5623467 Cma20g00140 Cma-Chr20:678683 0 dispersed
Cma15g01323 Cma-Chr15:8308673 Cma02g00946 Cma-Chr2:5623467 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g257 . . . Bda08g00751 Bpe05g00390 . . . Cmo06g00541 . Cma02g00946 Cma15g01323 Car02g00695 Car15g01188 . . Cpe05g00767 . . . . . . . . . . . . . . . . . . . Csa05g00158 Chy09g01340 . . . . . . . Bma05g00539 Bma12g00420 . Cmo02g00955 Cmo15g01386 Cma06g00538 . Car06g00476 . Cpe08g00954 . Bhi12g00079 . . . . . Lcy12g1510 Cla01g00140 Cam01g0145 . . Clacu01g0140 Cmu01g0140 Cre09g2366 Lsi09g00131 . . Cme09g01887
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005583 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00946 Cma_Chr02 FPKM 0.926307 1.024198 2.663777 1.959308 0.75699 0.953875 0.786396 8.661297 7.921258 8.603317