Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00950 ATGGCGGTGGATTCGTTCTTGTTGGAGGCGGCGGAGGCGGCGGAGGCTTCAACTGCCTACGATTCAGCGTTTAAGATTTTGATGTTCATTGTTCGTTTGTGGGTGGGGATTATTGTGGGGGTGTTGGTGGGATGGATTTGGAAACCTAAATGGGCGGATTTCGGTAGTGATTTATTCCATTCTTCAAATTCATCGCAACTCGGAGGCGAAAATCGAGCCCAGTTAACTGAGGAGGATTTAAAGCATTTATACAGGCTTGTTGAGGAGAAAGATGGAGGAGCCTCATGGATTCAAATGATGGATCGCTCTACTGCTACCATGAGCTATCAAGCATGGCGGAGAGACCCTGAGACCGGGCCACCGCAGTATCGAAGCCGAACGATTTTTGAGGATGCAACACCTCAGATGGTGAGGGATTTCTTTTGGGATGATGAATTTAGACAGAAATGGGATGATATGCTTGTAAGTGCTCAAACTTTGGAGGAGTGTCCTACCACGGGGACCATGACAGTCCACTGGGTTCGCAAGTTCCCTTTCTTCTGTAGTAATCGAGAATACGTGATCGGACGAAGAATTTGGGAATCGGGACAGTCATATTACTGTGTGACAAAGGGTGTGCCTTGTTCCTCAGTACCTAGACAAAACAAGCTAAAACGTGTCGATCTCTACTACTCGAGTTGGTGCATCCGTGCAGTGGAGTCGAAAACAGGGAACGGGCAGCTGAGTGCATGTGAGGTGTCGCTATTTCACTACGAAGACATGGGCATTCCATGGGAAATTGCCAAGCTTGGAGTGAGGCAGGGGATGTGGGGAGCTGTGAAGAAGATGGATCCCGCGTTACGTTTGTATCAAAAGCATAGAGCGACGGAGGCCCCGGTTTCGAAGTGTGTAGTGATGGGGAATATCAACACAAAAGTGAGTACTGAGTTTCTGAGATGCTCAGAAGAAGAAGCATCAGATGATCCCACAGAGGTGAACAAAAGGTTGGAGCCCTCTGAAAAAGCAGGAGGGAAGAACTTTCCAAAGCTTCTTATGGTGGGTGGAGCGATCGCCCTTGCTTGTACTCTCGACCACGGCCTCTTAACGAAAGCAGTTGTATTCGGAGTTGCTCGGAGATTTTCGAACATCGGAAAGAGATGA 1140 48.42 MAVDSFLLEAAEAAEASTAYDSAFKILMFIVRLWVGIIVGVLVGWIWKPKWADFGSDLFHSSNSSQLGGENRAQLTEEDLKHLYRLVEEKDGGASWIQMMDRSTATMSYQAWRRDPETGPPQYRSRTIFEDATPQMVRDFFWDDEFRQKWDDMLVSAQTLEECPTTGTMTVHWVRKFPFFCSNREYVIGRRIWESGQSYYCVTKGVPCSSVPRQNKLKRVDLYYSSWCIRAVESKTGNGQLSACEVSLFHYEDMGIPWEIAKLGVRQGMWGAVKKMDPALRLYQKHRATEAPVSKCVVMGNINTKVSTEFLRCSEEEASDDPTEVNKRLEPSEKAGGKNFPKLLMVGGAIALACTLDHGLLTKAVVFGVARRFSNIGKR 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5648207 5650915 - CmaCh02G009500.1 Cma02g00950 288701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00950 379 Gene3D - 71 287 IPR023393 -
Cma02g00950 379 SUPERFAMILY Bet v1-like 71 279 - -
Cma02g00950 379 PANTHER PHOSPHATIDYLCHOLINE TRANSFER PROTEIN 61 379 - -
Cma02g00950 379 PANTHER PHOSPHATIDYLCHOLINE TRANSFER PROTEIN 12 63 - -
Cma02g00950 379 CDD START_STARD2_7-like 76 283 - -
Cma02g00950 379 Pfam START domain 81 282 IPR002913 GO:0008289
Cma02g00950 379 ProSiteProfiles START domain profile. 96 285 IPR002913 GO:0008289
Cma02g00950 379 PANTHER PROTEIN CP5, PUTATIVE-RELATED 61 379 - -
Cma02g00950 379 PANTHER PROTEIN CP5, PUTATIVE-RELATED 12 63 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00950 - - - csv:101209462 601.668
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00950 Cma16g00603 CCT
Cma02g00950 Cma15g01328 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00788 Cma-Chr14:3985850 Cma02g00950 Cma-Chr2:5648207 2.25E-40 transposed
Cma14g01782 Cma-Chr14:12897482 Cma02g00950 Cma-Chr2:5648207 1.10E-109 transposed
Cma16g00603 Cma-Chr16:3109923 Cma02g00950 Cma-Chr2:5648207 0 transposed
Cma15g01328 Cma-Chr15:8339554 Cma02g00950 Cma-Chr2:5648207 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g264 . Blo03g00229 . . . . Bma07g01036 Bma14g00095 . . Cma02g00950 Cma15g01328 Car02g00699 Car15g01194 . Cpe14g00512 Cpe05g00764 . . . . . . . Cla07g00787 Cam07g0850 Cec07g0903 Cco07g0885 Clacu07g0825 Cmu07g0828 Cre07g1186 . . . . . Csa05g00152 Chy09g01344 Cme07g01642 Blo03g00796 Blo19g00133 Bda07g00157 Bda09g00631 Bpe08g00909 Bpe11g00376 . . . Cmo02g00958 . . Cma16g00603 . . . . Bhi12g00073 . . Lac11g1892 Hepe06g1425 . Lcy12g1503 Cla01g00135 Cam01g0137 Cec01g0137 Cco01g0139 Clacu01g0133 Cmu01g0135 Cre09g2370 Lsi09g00125 Csa04g00585 Chy07g01226 Cme09g01892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002222 2 3 2 3 2 2 3 2 2 2 2 2 3 2 2 1 2 2 2 2 2 2 2 2 2 2 2 3 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00950 Cma_Chr02 FPKM 3.305703 3.036424 7.589737 7.336729 7.545977 9.953816 7.438794 5.258928 5.488983 4.157007