Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00952 ATGGAAGTGCAAAATCATGATCATGGTCACATGATTGAAGTAATTGGAGATGTGCAAGCAGTAGGGCCTAGCATTGTGGGAAGTAAAATTTGTGGGGAGGCACCTTCCTGTGGATTTAAAGACGCAAAAAACAGTTCGATTGATATGAGGGAGCGAAATGCATCCATGCGGAAGCTTTTCATAGCAGCTGTTTGCTGCATCGTTTTTATGAGTATAGAAGTAGTGGGAGGTATTAAAGCAAACAGTCTTGCAATATTGACTGATGCTGCTCATTTGTTGTCGGATGTTGCTGCTTTTGCCATTTCCTTGTTCTCTCTCTGGGCCTCTGGTTGGGAGGCAACTCCACGCCAGTCATATGGGTTCTTCCGGATTGAAATACTTGGTGCCCTCGTTTCCATTCAGATGATCTGGCTTCTTGCTGGGATTCTTGTTTATGAAGCCATTGTCCGCCTTATCAATGGTCCGGGAGAAGTCAAGGGGCTGCTTATGTTTGCTGTTTCTGCATTTGGGTTGGTTGTTAACATAGCTATGGCTCTGCTGCTCGGTCACGAACATGGTCATGCTCATTCTCATGGCCACAGTCATGGACATGGTGATCACAACCACGGTCCTGGTGGCCACGAACACGGTCATGAGGATCATAGGCATCACCATGGGATTAGTGTTACCGCACACCACCACCACCACCCCCACCACGAAGAAGAGGGAGCTGCCGGCGATAGTGTTAAGCATCAACATCATCACGCACATGAGGAATCAGTAACTACACCCTTACTTGAAAGCCATTCACAAAAGGTTACCAAGACCCAGAAAAGAGAACGAAACATAAACGTCCAGGGGGCTTACCTTCACGTACTCGGAGATTCCATCCAAAGCGTTGGAGTGATGGTTGGCGGGGCAATCATATGGTATAAACCCGAATACAAGATTCTTGATCTGATATGCACTCTCATTTTCTCTGTAATTGTGCTATACACAACAATTCAAATGCTCCGAAACATCCTCGAGGTTCTAATGGAGAGTACACCGCGAGAGATTGATGCAACGAAGCTCGAGAAGGGTCTATGCGAGATGGAGGAAGTAGTTGCAGTTCATGAACTGCACATCTGGGCGATAACGGTTGGAAAGGTTCTATTGGCATGCCATGTTATAATAAAGCCAGAGGCAAATGCAGATATGGTATTGGACAATGTTATAGAGTATATCAAAAGAGAGTACAACATCAGCCATGTCACCATTCAGATAGAGCGCCAGTAG 1257 45.98 MEVQNHDHGHMIEVIGDVQAVGPSIVGSKICGEAPSCGFKDAKNSSIDMRERNASMRKLFIAAVCCIVFMSIEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPGEVKGLLMFAVSAFGLVVNIAMALLLGHEHGHAHSHGHSHGHGDHNHGPGGHEHGHEDHRHHHGISVTAHHHHHPHHEEEGAAGDSVKHQHHHAHEESVTTPLLESHSQKVTKTQKRERNINVQGAYLHVLGDSIQSVGVMVGGAIIWYKPEYKILDLICTLIFSVIVLYTTIQMLRNILEVLMESTPREIDATKLEKGLCEMEEVVAVHELHIWAITVGKVLLACHVIIKPEANADMVLDNVIEYIKREYNISHVTIQIERQ 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5662435 5666104 + CmaCh02G009520.1 Cma02g00952 288703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00952 418 Pfam Cation efflux family 59 339 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cma02g00952 418 SUPERFAMILY Cation efflux protein transmembrane domain-like 53 340 IPR027469 -
Cma02g00952 418 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 345 416 IPR036837 -
Cma02g00952 418 Gene3D Cation efflux protein transmembrane domain 55 338 IPR027469 -
Cma02g00952 418 MobiDBLite consensus disorder prediction 197 219 - -
Cma02g00952 418 MobiDBLite consensus disorder prediction 227 255 - -
Cma02g00952 418 MobiDBLite consensus disorder prediction 186 271 - -
Cma02g00952 418 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 1 417 - -
Cma02g00952 418 PANTHER METAL TOLERANCE PROTEIN A1 1 417 - -
Cma02g00952 418 TIGRFAM CDF: cation diffusion facilitator family transporter 56 418 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00627 Cma-Chr1:3276791 Cma02g00952 Cma-Chr2:5662435 3.10E-46 dispersed
Cma02g00952 Cma-Chr2:5662435 Cma17g00606 Cma-Chr17:5130192 0 dispersed
Cma02g00952 Cma-Chr2:5662435 Cma11g01060 Cma-Chr11:5817036 2.11E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00952 K14689 - csv:101213602 647.506