Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00955 ATGTCGGATTGCCATTTAAATGATGTAAAAGGCAACACCAGCGCCGAAAAGAACAATGAAGCGGACCTTGAGAAGCAGAGGGTTGAGCTGCCGTCAGCAGCAGATCCCTCTACCAGTGATGTCGATGATCATACACCATTGACAATTGTTGTGTCTAATGGGGAACTTAAATCAGTCTCTGAGGTTCCTCGAGAGAAATTATTGCCTTGTGCAGTTTCCCCCATGAAGGAACTCTTGTCTACAACTTCTAGCTCTGATGAGCAGTGCAGAATTTGTCAGCAAGAAAAGGAAGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGTGGTCTCGCAAAAGCTCATCGGACTTGCATAGATACTTGGTTTCGTAGTAAAGGATCAAACCGATGTGAGATTTGCCAGGTTGTAGCAGCGAATGTATCACCTCCACAATCACATCATGCTGTAGCTTTTGCCATCCTCATCGGAGGTCTGCTACTGGACATTCTTGTATCCATCACCCTCGGCATTTCGGCGTTACCTAACAGGAGTTATTGTAGTGCTTGGCCTTGGAACTGTTTTAAGACTTGCCCTGGAGTTCTTTCAAGAGTGGAATTCAACAAGAGGATCGCAAAGGGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAGTCTTCAAATTCAAAACAACAAACATAGTGAAAACAGGTTTTATTCTCGTCTTTTCCGACCTGTTTTAG 729 43.76 MSDCHLNDVKGNTSAEKNNEADLEKQRVELPSAADPSTSDVDDHTPLTIVVSNGELKSVSEVPREKLLPCAVSPMKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRTCIDTWFRSKGSNRCEICQVVAANVSPPQSHHAVAFAILIGGLLLDILVSITLGISALPNRSYCSAWPWNCFKTCPGVLSRVEFNKRIAKGGIKCHYWVLSSYIVFKFKTTNIVKTGFILVFSDLF 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5679159 5684382 + CmaCh02G009550.1 Cma02g00955 288706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00955 242 PANTHER ZINC FINGER, RING-CH-TYPE 150 175 - -
Cma02g00955 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH11 ISOFORM X1 59 148 - -
Cma02g00955 242 ProSiteProfiles Zinc finger RING-CH-type profile. 81 141 IPR011016 GO:0008270
Cma02g00955 242 MobiDBLite consensus disorder prediction 15 29 - -
Cma02g00955 242 PANTHER ZINC FINGER, RING-CH-TYPE 59 148 - -
Cma02g00955 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH11 ISOFORM X1 150 175 - -
Cma02g00955 242 SUPERFAMILY RING/U-box 84 137 - -
Cma02g00955 242 CDD RING_CH-C4HC3_MARCH 89 135 - -
Cma02g00955 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 143 IPR013083 -
Cma02g00955 242 Pfam RING-variant domain 89 134 IPR011016 GO:0008270
Cma02g00955 242 MobiDBLite consensus disorder prediction 1 45 - -
Cma02g00955 242 SMART ringv_2 88 135 IPR011016 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00955 - - - mcha:111026101 265.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00955 Cma-Chr2:5679159 Cma06g00260 Cma-Chr6:1296853 2.51E-11 dispersed
Cma15g01336 Cma-Chr15:8384698 Cma02g00955 Cma-Chr2:5679159 2.51E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g282 . . . Bda08g00749 . . . . . . Cma02g00955 . Car02g00704 Car15g01201 . . . . . . . . . . . . . . . . . . . . . . . Chy09g01350 . . . . . . . . . . Cmo02g00963 . . . . . . . Bhi12g00062 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004760 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 4 8 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00955 Cma_Chr02 FPKM 2.089163 0.0 1.630886 1.714358 7.455225 5.373589 6.410652 2.504652 2.416064 2.087874