Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma02g00959 | ATGGATTTTGGGTTCAATTCACTCCAAAATCACCATCTTCGCTCGAGAAATGGCCTGAATTTGGAGCCGGCGGAGGAAGCTAGTTCCGCCGCCGTGGATTTCGACGGTGGTGGTGGTGGTGGCGGTGGAGGAGAGGTTGAGAGGGAACATATGTTCGACAAAGTGGTGACGCCGAGTGATGTTGGGAAATTGAATCGGTTAGTGATTCCAAAGCAACATGCTGAGAGGTTTTTCCCATTAGATTCATCAACAAATGAAAAGGGTTTGCTTTTAAATTTCGAAGATCGCCACGGGATATCGTGGCGGTTTCGTTACTCTTACTGGAATAGTAGCCAGAGTTATGTTATGACTAAAGGTTGGAGTCGATTCGTTAAAGAGAAGCGTCTCGACGCCGGTGATGTCGTTTCGTTTCAACGTGGAGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGGCGTCGTCGCCCGGAGCTTCCAATTGACCACCACCACCACCACCACCACCATCCCATCGGCATCCGACCAAGCATCGTCATGCCCACCACCGCTACCGCTTGGGGGTCATTAGTATGGCAACCACTCGGCGTAACAGCAACTGGGTATCATCATCATCCAGCTACCGTAGCACCGCAGGACCACACACACATGTCGCGAATAAACAATAACAGCAACAACAACAGCAACATTAACGCTATGTATGATAGGAATAGAGGGTATTGTCCTTACGGATATGGGAGTGTTGAATCATCATCGTCATCAGAAATGGTGTTTTTTGGGAGAGCCCCAAGATTAGGGGATGGTTTGGAGGGGAAGAATGAGATGCAGCCGGAGTATATGAGTAGTGGCGGTGGCGGTGGTTCGATGGCGGTCCAAGAGAGTTACAGCGAAGAAGATACGCCGGTGAAGAGATCAAGGCTGAGGCTTTTTGGTGTAAATATGGAGATGGAGTGCCCAATAATGTCATCTTCTTCTGATGAATGTGACTTATTACTGTCTTCCTCTTCTAATTCAAACCCCAAAACCACCGCTCCTTCCAATTGA | 1044 | 48.28 | MDFGFNSLQNHHLRSRNGLNLEPAEEASSAAVDFDGGGGGGGGGEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNEKGLLLNFEDRHGISWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDVVSFQRGVGEIGRDRLYIDWRRRPELPIDHHHHHHHHPIGIRPSIVMPTTATAWGSLVWQPLGVTATGYHHHPATVAPQDHTHMSRINNNSNNNSNINAMYDRNRGYCPYGYGSVESSSSSEMVFFGRAPRLGDGLEGKNEMQPEYMSSGGGGGSMAVQESYSEEDTPVKRSRLRLFGVNMEMECPIMSSSSDECDLLLSSSSNSNPKTTAPSN | 347 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 5702087 | 5703130 | - | CmaCh02G009590.1 | Cma02g00959 | 288710 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma02g00959 | 347 | ProSiteProfiles | B3 DNA-binding domain profile. | 52 | 157 | IPR003340 | GO:0003677 | |
| Cma02g00959 | 347 | MobiDBLite | consensus disorder prediction | 26 | 47 | - | - | |
| Cma02g00959 | 347 | MobiDBLite | consensus disorder prediction | 280 | 300 | - | - | |
| Cma02g00959 | 347 | SMART | B3_2 | 52 | 157 | IPR003340 | GO:0003677 | |
| Cma02g00959 | 347 | SUPERFAMILY | DNA-binding pseudobarrel domain | 49 | 158 | IPR015300 | - | |
| Cma02g00959 | 347 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 24 | 334 | IPR044800 | GO:0003700 | |
| Cma02g00959 | 347 | MobiDBLite | consensus disorder prediction | 327 | 347 | - | - | |
| Cma02g00959 | 347 | CDD | B3_DNA | 50 | 139 | IPR003340 | GO:0003677 | |
| Cma02g00959 | 347 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 | 24 | 334 | - | - | |
| Cma02g00959 | 347 | Gene3D | - | 46 | 170 | IPR015300 | - | |
| Cma02g00959 | 347 | Pfam | B3 DNA binding domain | 52 | 156 | IPR003340 | GO:0003677 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma02g00959 | Cma-Chr2:5702087 | Cma04g00739 | Cma-Chr4:3757346 | 3.86E-69 | dispersed | |
| Cma15g01340 | Cma-Chr15:8405825 | Cma02g00959 | Cma-Chr2:5702087 | 8.60E-112 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34493 | PF02362 | B3 | 1.20E-28 | CL0405 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma02g00959 | - | - | cpep:111796005 | 582.022 |