Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00959 ATGGATTTTGGGTTCAATTCACTCCAAAATCACCATCTTCGCTCGAGAAATGGCCTGAATTTGGAGCCGGCGGAGGAAGCTAGTTCCGCCGCCGTGGATTTCGACGGTGGTGGTGGTGGTGGCGGTGGAGGAGAGGTTGAGAGGGAACATATGTTCGACAAAGTGGTGACGCCGAGTGATGTTGGGAAATTGAATCGGTTAGTGATTCCAAAGCAACATGCTGAGAGGTTTTTCCCATTAGATTCATCAACAAATGAAAAGGGTTTGCTTTTAAATTTCGAAGATCGCCACGGGATATCGTGGCGGTTTCGTTACTCTTACTGGAATAGTAGCCAGAGTTATGTTATGACTAAAGGTTGGAGTCGATTCGTTAAAGAGAAGCGTCTCGACGCCGGTGATGTCGTTTCGTTTCAACGTGGAGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGGCGTCGTCGCCCGGAGCTTCCAATTGACCACCACCACCACCACCACCACCATCCCATCGGCATCCGACCAAGCATCGTCATGCCCACCACCGCTACCGCTTGGGGGTCATTAGTATGGCAACCACTCGGCGTAACAGCAACTGGGTATCATCATCATCCAGCTACCGTAGCACCGCAGGACCACACACACATGTCGCGAATAAACAATAACAGCAACAACAACAGCAACATTAACGCTATGTATGATAGGAATAGAGGGTATTGTCCTTACGGATATGGGAGTGTTGAATCATCATCGTCATCAGAAATGGTGTTTTTTGGGAGAGCCCCAAGATTAGGGGATGGTTTGGAGGGGAAGAATGAGATGCAGCCGGAGTATATGAGTAGTGGCGGTGGCGGTGGTTCGATGGCGGTCCAAGAGAGTTACAGCGAAGAAGATACGCCGGTGAAGAGATCAAGGCTGAGGCTTTTTGGTGTAAATATGGAGATGGAGTGCCCAATAATGTCATCTTCTTCTGATGAATGTGACTTATTACTGTCTTCCTCTTCTAATTCAAACCCCAAAACCACCGCTCCTTCCAATTGA 1044 48.28 MDFGFNSLQNHHLRSRNGLNLEPAEEASSAAVDFDGGGGGGGGGEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNEKGLLLNFEDRHGISWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDVVSFQRGVGEIGRDRLYIDWRRRPELPIDHHHHHHHHPIGIRPSIVMPTTATAWGSLVWQPLGVTATGYHHHPATVAPQDHTHMSRINNNSNNNSNINAMYDRNRGYCPYGYGSVESSSSSEMVFFGRAPRLGDGLEGKNEMQPEYMSSGGGGGSMAVQESYSEEDTPVKRSRLRLFGVNMEMECPIMSSSSDECDLLLSSSSNSNPKTTAPSN 347
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 5702087 5703130 - CmaCh02G009590.1 Cma02g00959 288710
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00959 347 ProSiteProfiles B3 DNA-binding domain profile. 52 157 IPR003340 GO:0003677
Cma02g00959 347 MobiDBLite consensus disorder prediction 26 47 - -
Cma02g00959 347 MobiDBLite consensus disorder prediction 280 300 - -
Cma02g00959 347 SMART B3_2 52 157 IPR003340 GO:0003677
Cma02g00959 347 SUPERFAMILY DNA-binding pseudobarrel domain 49 158 IPR015300 -
Cma02g00959 347 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 24 334 IPR044800 GO:0003700
Cma02g00959 347 MobiDBLite consensus disorder prediction 327 347 - -
Cma02g00959 347 CDD B3_DNA 50 139 IPR003340 GO:0003677
Cma02g00959 347 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 24 334 - -
Cma02g00959 347 Gene3D - 46 170 IPR015300 -
Cma02g00959 347 Pfam B3 DNA binding domain 52 156 IPR003340 GO:0003677
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00959 Cma-Chr2:5702087 Cma04g00739 Cma-Chr4:3757346 3.86E-69 dispersed
Cma15g01340 Cma-Chr15:8405825 Cma02g00959 Cma-Chr2:5702087 8.60E-112 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34493 PF02362 B3 1.20E-28 CL0405 Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00959 - - cpep:111796005 582.022