Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00962 ATGAGTTCCCATACTTCCTCTGAAGATTGTCTTGGTTGGGCCGCAAGAGATCCGTCTGGATTTCTGTCTCCTTATAAATTCAGTCGTAGGGTTCCTGGAGATGATGATGTTTCAATTACAATAACACATTGCGGAATTTGTTATGCAGACGTATTATGGACAAGAAATAAATTAGGAGATTCAAAATATCCTTTGGTGCCTGGACATGAGATTGCAGGAATTGTGGAAACTGTTGGCGCAAATGTTCACCGATTTAAAGTTGGAGATCATGTTGGGGTAGGAACTTACGTGAATTCTTGCAGACAATGCGAGTATTGTGAAGATGGTCAAGAAGTTTGTTGCACGGGTGGATCCACTAATACTTTTAATGGAATTGATTTTGACGGTACAGTTACAAAGGGAGGATATTCTAACTACATAGTTGTCCATGAGAGATACTGCTACAGAATTCCTGAGAATTATCCTTTAGCTTCAGCTGCTCCTTTGCTTTGTGCTGGAATTACAGTTTATTCTCCAATGATTCGTCATAAGATGAATCAACCTGGTAAATCTCTAGGAGTGATTGGGCTTGGTGGTCTCGGCCACTTGGCAGTGAAGTTCGGGAAGGCTTTTGGACTGAATGTGACAGTTTTTAGCACTAGCATATCCAAGAAAGAAGAAGCCCTGAGCGTTCTTGGATCAGACAAATTTGTTCTCTCATCTGATACCGAGCAAATGGAGGCCTTGTCCAAGTCCCTTGACTTTATTATCGATGCTGCATCTGGTGATCATCCATTTGATCCATACATGTCTACATTGAAGGTTGGTGGCACTATGGTTCTGGTTGGGTTTCCTTCTCAAGTCAAGTTCAGTCCTGCAAGCCTAAATTTGGGTATGAGAACTATTTCTGGGAGCGTAACTGGAGGCACTCGAGTGACCCAAGAAATGATCGACTTCTGTGCTGCTCATGGAATCTATCCAAACATTGACGTGATTCCAATTCAATACTCTAATGAAGCCATTGAAAGGGTAATAAAAAACGATGTCAAGTACCGATTTGTAATTGATATCCAAGGCTCCCTAAAATGA 1068 41.48 MSSHTSSEDCLGWAARDPSGFLSPYKFSRRVPGDDDVSITITHCGICYADVLWTRNKLGDSKYPLVPGHEIAGIVETVGANVHRFKVGDHVGVGTYVNSCRQCEYCEDGQEVCCTGGSTNTFNGIDFDGTVTKGGYSNYIVVHERYCYRIPENYPLASAAPLLCAGITVYSPMIRHKMNQPGKSLGVIGLGGLGHLAVKFGKAFGLNVTVFSTSISKKEEALSVLGSDKFVLSSDTEQMEALSKSLDFIIDAASGDHPFDPYMSTLKVGGTMVLVGFPSQVKFSPASLNLGMRTISGSVTGGTRVTQEMIDFCAAHGIYPNIDVIPIQYSNEAIERVIKNDVKYRFVIDIQGSLK 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5722571 5726297 - CmaCh02G009620.1 Cma02g00962 288713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00962 355 PANTHER - 2 354 - -
Cma02g00962 355 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Cma02g00962 355 PANTHER ALDEHYDE REDUCTASE 2 354 - -
Cma02g00962 355 Gene3D - 165 320 - -
Cma02g00962 355 Pfam Zinc-binding dehydrogenase 192 314 IPR013149 -
Cma02g00962 355 CDD CAD1 12 349 - -
Cma02g00962 355 Pfam Alcohol dehydrogenase GroES-like domain 35 149 IPR013154 -
Cma02g00962 355 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491
Cma02g00962 355 Gene3D - 13 350 - -
Cma02g00962 355 SUPERFAMILY GroES-like 16 183 IPR011032 -
Cma02g00962 355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 318 IPR036291 -
Cma02g00962 355 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 185 212 IPR029752 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00962 Cma-Chr2:5722571 Cma20g01080 Cma-Chr20:8298392 7.25E-117 dispersed
Cma02g00962 Cma-Chr2:5722571 Cma11g01723 Cma-Chr11:11428029 1.39E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00962 K00083 - csv:101211438 652.129