Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00968 ATGGTGGAGACGGAGAACATGGCCGATTCGTCGCACAACGTGGAGGATGAAGTTGGGAGAGTGGTGGAGCAGGCGAAGGAGCTGCATGATTCGGCTGCATCTCTAATCTCCAGAACAGCCACCGATGAGCAGTCTCTCTGCCAGCGTGCTCTCTCTCTTGACTCTTCCATTCGCCGTCTCCATGACTTGCAGAGAGCTAGGTGTCTGATGGTCGATGGAGAAGTTGCATCTTTTCTTCCTAGGAAGGCTCAGGGGAAGTTCTTGCAGATGTTTCTGGGACCTATTAACGTGCGTGCCTCACGGAAGGACGTTCAGTTGAAAGTTAAAGAGGAGTACAACAGTTACAGAGATAGGACTGCTCTTCTTTTTCTTCTTTTTCCATCACTACTGCTAGTTCTAAGAGGCTGGGTTTGGGATGGATGCTTGCCTGCATTTCCAGTTCAGCTGTATCAGGCATGGCTTTTGTTCCTATACACAGGATTGGCATTGCGTGAAAACATACTAAGAGTCAACGGAAGTGACATTCGTCCTTGGTGGATATACCATCACTATTGCGCTATGATTATGGCCCTTGTTAGTCTTACGTGGGAGATCAAAGGACAACCAAATTGTGCCCAAAAACAGAGAGGTGTCCAACTCTTCCTACAGTGGGCCATGATGCAAGGAGTTGCAATGCTTTTACAAAATAGATACCAGCGTCAGAGGCTTTATACTCGGATTGCACTTGGAAAGGCTAAGAGAATGGATGTCGTTTGGGGAGAAACAGCTGGTGTAGATGGTCAACTTTGGATACTGTGTCCTTTACTATTTATCTTACAGGGCTTTGAGGCGTATGTTGGATTGCTCCTCCTCAAGACTGCATTGGTTGGCGTGGTTCCTGAATGGCAGGTGTTATTTTGTGGATTCCTTTTGGTTCTAATGGCAGTCGGGAACTTTTCAAATACAGTGCAAACCTTAATGGCAAAATCAAGATTCAAGGCAAAGATGAAGAGAAGCAAGAGCAAGCAGGAATTGGCCCCGACCCGTTCTTAA 1032 46.8 MVETENMADSSHNVEDEVGRVVEQAKELHDSAASLISRTATDEQSLCQRALSLDSSIRRLHDLQRARCLMVDGEVASFLPRKAQGKFLQMFLGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSLLLVLRGWVWDGCLPAFPVQLYQAWLLFLYTGLALRENILRVNGSDIRPWWIYHHYCAMIMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWILCPLLFILQGFEAYVGLLLLKTALVGVVPEWQVLFCGFLLVLMAVGNFSNTVQTLMAKSRFKAKMKRSKSKQELAPTRS 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5773819 5781842 + CmaCh02G009680.1 Cma02g00968 288719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00968 343 Pfam TMPIT-like protein 13 325 IPR012926 GO:0016021
Cma02g00968 343 PANTHER TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA 14 338 IPR012926 GO:0016021
Cma02g00968 343 PANTHER TMPIT-LIKE PROTEIN 14 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00968 - - - csv:101212162 630.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00968 Cma-Chr2:5773819 Cma15g01345 Cma-Chr15:8438088 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g295 . . . . . . Bma07g01057 Bma14g00083 . . Cma02g00968 . Car02g00714 Car15g01213 . . Cpe05g00749 . . . . . . . . . . . . . . Cone8ag0574 Cone12ag0576 . . . Csa05g00133 Chy09g01361 . Blo03g00780 Blo19g00112 Bda07g00172 Bda09g00619 Bpe08g00925 Bpe11g00387 . . . Cmo02g00974 . . . . . . . Bhi12g00050 . . Lac11g1817 Hepe06g1402 . Lcy12g1456 Cla01g00117 Cam01g0119 Cec01g0119 Cco01g0120 Clacu01g0116 Cmu01g0117 Cre09g2388 Lsi09g00105 . . Cme09g01907
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006231 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 2 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00968 Cma_Chr02 FPKM 23.336634 25.429462 25.118544 27.741465 22.643023 19.595398 24.471006 28.588545 30.14076 33.05191