Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00969 CACAGTGAGTTGTGTTCAACAGAACCTGGATCCGGATCCGGATCCGGATTGGAATTACCTCCATCTCAATCTCAATTTACAGTTTCGCCGCCGGATATCACCACTCCGTCCTTGACTGTAGACGCCATAACCGATTCTCAACAAGTCGAAGCTGCTTCGCCGATTAGTAGTCGCCCTCCTGCATCGTCTTCCTTGAATTATGAGGAACTCTTTCGTCTCTCCACTACTGTCCAGATGCCGGTCGTCGGCGATGATGAAGCACTTGCTGGAGATGATGCCGACCGAACAACCGGTAGTAGCGGCGCTGGTAATCGATGGCCTCGTCAGGAAACTCTAGCGCTGCTTAGAATTAGGTCAGACATGGATTCCGCTTTCCGTGATGCGACACTCAAAGGTCCTCTCTGGGATGAAGTTTCCAGGAAGCTAACGGAATTGGGTTACAACAGAAGCGCCAAAAAATGCAAAGAGAAATTCGAGAACGTTCAGAAATATTACAAGCGCACTAAAGAAGGCCGTGGTGGCCGTCAAGATGGCAAAACCTACAAATTCTTCACACAACTTGAGGCACTTCACAACGCCTCCGCCTCCGCCTCCGCCGCCGCATCTACTCCCAACGTGGCGGTTTCTTGTTTCTCAGCGCCGCCCATTGGTTTTGGAATTAGTAACCCAACTCCAATCTCATCTGTCAAAATCTCTTCCACTGCCATTTCCTCACAGACCCCAATGGGAATCTATTCACCTGCTGACCATTTCACCGTCAGGCCACCGCCTGCGACCGCTCCTATGGGTGTCAGCTTTTCGTCGAACACCTCGTCTGCATCCACGGAGGAGGACGATAACGATGAAGAGGAGATGGGGTTTGATGTTGACCTTGAAGGGGAGCCGTCGAGTGTCGCCGGAACCAGTCGGAAGCGGCGGAGGGGGGTGGTTAAGGGAAGTGGGTCGAGAACCCATAAGATGATGATGGAGTTTTTTGAGGGTTTGATGAAGGAAGTTATGCATAAACAGGAGGTTATGCAGCAGAAGTTTCTGGAAGCGATGGGGAAGAGAGAGCAGGATAGAATGATTAGAGAAGAGACGTGGAAAAGGCAAGAAATGGCTAGATTGAGCCGAGAGCAAGAGAGAATGGCACAAGAGCGGACAATTTCTGCTTCTAGGGATGCCGCTATCATTGCTTTTCTCCAGAAATTTACTGGCCAAACCATTCAATTACCTGTGGTGAATATCCCTTCTTCTGTAGCCCCACACCACCAACATCAACAACATGATGTGCCTGTGCCTACGCCTGTGCCTGTCCCAGTGTCAGTGCCCGTGCCATTATCTCCTGTCCCCCCTCCGCCATTGCAACCACAAACAGCTCTGTCACTGCAGCAAAATCAAAAAACCGCCCAGGATCAGAATCCGCCGCCTTCAAATACACTGTCGCCATTGGATCAGCCAATGCCATATCAGGAAATCAGCCAAGGGGGAGATGGGAGTGCCGAACCCTTCTCTTCAAGATGGCCAAAACCGGAAGTTCTAGCTCTGATTAAGCTGAGAGGTGGGCTTGAAACGAGGTATCAAGAGACAGGTCCAAAGGGTCTTCTCTGGGAAGAGATATCAGCTGGAATGCAACGGATGGGTTACAAGAGAAGCGCCAAAAGATGCAAGGAGAAATGGGAAAACATCAATAAGTACTTCAAGAAGGTTAAAGAAAGCAACAAAAAACGCCGCGAGAATTCCAAAACCTGCCCCTATTTCAACGAACTCGACGCCCTTTACCGCAAAAAGATCCTCGGCAGCGGCGGCGGTGGTTCGGATGGCGGTGGTAGTGGCAGTAGAAGCTCGTTTAGCGACACGAGCAAAACCGAACAAGACCCCATTAAGAATATGGACACGGAAATAGCCCCATCAACAGCTACAGAAACTTCTCAAACCATACTCACTGAGGGCCTATCCGCAAGCCTCTTCGGTGAAGGAACTGAAGAACAACCAGCAACATCCACGAAGCCAGAAGACATTGTGAATGAGCTGATGGAGCTGCACGAGCTATGCCGACCTGATAGCAACAATGAAGAAGAGTACTGCAGCGAAGATGAGGATGATACACCAGACAACGACGACAAGGACAAGGACAAGAACAAGAACACGAAGAACACGAAGAAAATGGATTATAAAATAGAGTTTGAGAGAAGAAATGCAGGGAGCTCCAATGGCGTGGGGAATGAGTTTCAGTCAATGGCGGTGGTTCAATAG 2235 49.84 HSELCSTEPGSGSGSGLELPPSQSQFTVSPPDITTPSLTVDAITDSQQVEAASPISSRPPASSSLNYEELFRLSTTVQMPVVGDDEALAGDDADRTTGSSGAGNRWPRQETLALLRIRSDMDSAFRDATLKGPLWDEVSRKLTELGYNRSAKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFTQLEALHNASASASAAASTPNVAVSCFSAPPIGFGISNPTPISSVKISSTAISSQTPMGIYSPADHFTVRPPPATAPMGVSFSSNTSSASTEEDDNDEEEMGFDVDLEGEPSSVAGTSRKRRRGVVKGSGSRTHKMMMEFFEGLMKEVMHKQEVMQQKFLEAMGKREQDRMIREETWKRQEMARLSREQERMAQERTISASRDAAIIAFLQKFTGQTIQLPVVNIPSSVAPHHQHQQHDVPVPTPVPVPVSVPVPLSPVPPPPLQPQTALSLQQNQKTAQDQNPPPSNTLSPLDQPMPYQEISQGGDGSAEPFSSRWPKPEVLALIKLRGGLETRYQETGPKGLLWEEISAGMQRMGYKRSAKRCKEKWENINKYFKKVKESNKKRRENSKTCPYFNELDALYRKKILGSGGGGSDGGGSGSRSSFSDTSKTEQDPIKNMDTEIAPSTATETSQTILTEGLSASLFGEGTEEQPATSTKPEDIVNELMELHELCRPDSNNEEEYCSEDEDDTPDNDDKDKDKNKNTKNTKKMDYKIEFERRNAGSSNGVGNEFQSMAVVQ 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5785720 5788970 - CmaCh02G009690.1 Cma02g00969 288720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00969 744 CDD GT1 104 169 - -
Cma02g00969 744 ProSiteProfiles Myb-like domain profile. 499 557 IPR001005 -
Cma02g00969 744 MobiDBLite consensus disorder prediction 275 290 - -
Cma02g00969 744 MobiDBLite consensus disorder prediction 700 724 - -
Cma02g00969 744 ProSiteProfiles Myb-like domain profile. 104 162 IPR001005 -
Cma02g00969 744 MobiDBLite consensus disorder prediction 1 38 - -
Cma02g00969 744 MobiDBLite consensus disorder prediction 437 500 - -
Cma02g00969 744 PANTHER - 46 599 - -
Cma02g00969 744 MobiDBLite consensus disorder prediction 728 744 - -
Cma02g00969 744 MobiDBLite consensus disorder prediction 247 315 - -
Cma02g00969 744 MobiDBLite consensus disorder prediction 594 638 - -
Cma02g00969 744 MobiDBLite consensus disorder prediction 452 482 - -
Cma02g00969 744 Pfam Myb/SANT-like DNA-binding domain 499 586 IPR044822 -
Cma02g00969 744 Pfam Myb/SANT-like DNA-binding domain 104 190 IPR044822 -
Cma02g00969 744 CDD GT1 499 564 - -
Cma02g00969 744 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 46 599 - -
Cma02g00969 744 MobiDBLite consensus disorder prediction 601 617 - -
Cma02g00969 744 Gene3D - 106 167 - -
Cma02g00969 744 Gene3D - 501 562 - -
Cma02g00969 744 SMART sant 102 164 IPR001005 -
Cma02g00969 744 SMART sant 497 559 IPR001005 -
Cma02g00969 744 MobiDBLite consensus disorder prediction 437 451 - -
Cma02g00969 744 MobiDBLite consensus disorder prediction 677 744 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00969 Cma06g00453 CCT
Cma02g00969 Cma15g01346 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00613 Cma-Chr2:3684740 Cma02g00969 Cma-Chr2:5785720 5.51E-22 dispersed
Cma02g00969 Cma-Chr2:5785720 Cma01g01012 Cma-Chr1:7366076 2.57E-125 dispersed
Cma09g01077 Cma-Chr9:5686463 Cma02g00969 Cma-Chr2:5785720 7.32E-121 dispersed
Cma15g01346 Cma-Chr15:8453337 Cma02g00969 Cma-Chr2:5785720 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34494 PF13837 Myb_DNA-bind_4 5.00E-22 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00969 - - cpep:111795959 1239.17