Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00970 ATGGGTTTGCTTCGATTCTTCAGGAAACCCAAAGTTGCTCATAAAAAAACCGTTCTTGACCATGTTTTTTTTGGTGCTGGGAAATTCCGGTGGACTGAGATCGAGGCTTTTACTAATCATTTCTCCACCGTTGTCGGCTCCGGCGGCTTTAGCAAAGTTTATCTTGCTCGGATGACGGCAGGAGCGGCGGCGGTTAAGATTTTGGGCGGTAGTGAGCGGCTCAATCGGATGTTCCGGCAGGAGTTGGACATTCTCCTTCAGCTCCGGCACCAGAATATTGTCGGTTTCATTGGCTATTGCGATGAACGAGATTTAGGAGCTTTAGTATTCGAATATGTCCCAAATGGGAATTTACAAGAGAAGCTCCACAGCCGACCGGCGGCGGCGGTTCTGCCATGGAAAATCCGGCTGACCATAGCCTTTCAATTAGCCCAAGCAATCGAATATCTCCACGAGAAATGCAGACTCCAAATCGTTCACAGCGATATAAAATCTTCGAACATTTTACTCGACGAACGATTCAATTGCAAATTGTGCGATTTCGGCTCTGCAAAAATGGGATTCTCGTCGGCGGTGGCGAATCAGTCGTCGTTGCCGCCGAGTCCCTTCAGAGCAAAGCAATTGATGATGGGATCCCCTGGTTACACAGATCCCCAATACTTACGAACCGGAATCGCCTCAAAGAAGAACGACATTTACAGTTTCGGCGTCGTTCTTTTGGAGCTAATCACCGGAAAAGAGGCATTCTGTTCGGAAAAGGGTCAGATTTTAACTTCAATTATACCGCCGACGGTGCGCCACGGTGGAGGAATTACACCGTCGGCTGTGGTGGAGCTAGTGGATCCACGGCTTCGGTGGGATTTCGATGGGGGAGAAGCGGGAGCGTTGCTCTCAATTGCGACGGCTTGCATATCGCAGCCGCCGGCGCCCAGGCCGACGATCGGTGGGGTGCTGCAGATGATGAGGGAGCGGATCGGGAAGATGAGCGGGACACGTGGCGATAAATTATTGGGAAATGAGCGGTGGTAA 1029 50.83 MGLLRFFRKPKVAHKKTVLDHVFFGAGKFRWTEIEAFTNHFSTVVGSGGFSKVYLARMTAGAAAVKILGGSERLNRMFRQELDILLQLRHQNIVGFIGYCDERDLGALVFEYVPNGNLQEKLHSRPAAAVLPWKIRLTIAFQLAQAIEYLHEKCRLQIVHSDIKSSNILLDERFNCKLCDFGSAKMGFSSAVANQSSLPPSPFRAKQLMMGSPGYTDPQYLRTGIASKKNDIYSFGVVLLELITGKEAFCSEKGQILTSIIPPTVRHGGGITPSAVVELVDPRLRWDFDGGEAGALLSIATACISQPPAPRPTIGGVLQMMRERIGKMSGTRGDKLLGNERW 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5800532 5802400 + CmaCh02G009700.1 Cma02g00970 288721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00970 342 SMART serkin_6 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00970 342 ProSiteProfiles Protein kinase domain profile. 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00970 342 SUPERFAMILY Protein kinase-like (PK-like) 26 321 IPR011009 -
Cma02g00970 342 Pfam Protein kinase domain 42 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00970 342 Gene3D Phosphorylase Kinase; domain 1 7 112 - -
Cma02g00970 342 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 25 331 - -
Cma02g00970 342 PANTHER BNAA02G22020D PROTEIN 25 331 - -
Cma02g00970 342 ProSitePatterns Protein kinases ATP-binding region signature. 45 66 IPR017441 GO:0005524
Cma02g00970 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672|GO:0006468
Cma02g00970 342 Gene3D Transferase(Phosphotransferase) domain 1 113 333 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00970 Cma15g01347 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00970 Cma-Chr2:5800532 Cma17g00747 Cma-Chr17:6069928 2.35E-57 dispersed
Cma15g01347 Cma-Chr15:8466818 Cma02g00970 Cma-Chr2:5800532 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68352 PF00069 Pkinase 1.60E-40 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00970 - - cmax:111468884 529.635