Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00971 ATGCCGGAATCGGAAAGTGGAACGCCGGTGCCGTCGGCACCGGCCACGCCGGGGACGCCGGGAGGGCCGCTGTTTTCTGGCTTGCGGGTGGATTCGTTGTCGTACGATCGGAAGTCAATGCCGCGGTGTAAGTGCTTGCCCGTGAATGCTCCCACGTGGGGCCAGCCTCACACGTGCTTCACTGACTTTCCTGTTCCTGATGTTTCTCTCACCCGCAAGTTGGGAGCAGAATTCGTGGGAACATTCATCCTGATATTTGCGGCGACGGCAGGACCCATTGTGAATCAAAAGTACAACGGCGCCGAGACTCTGATCGGAAACGCTGCGTGTGCCGGGATGGCCGTAATGATCGTAATTCTGTCGACGGGACACATCTCCGGCGCCCACCTAAACCCATCGCTCACCATTGCCTTCGCCGCTCTCCGCCACTTCCCATGGATCCAAGTCCCTGCCTACATCGCTGCTCAGGTCTCTGCTTCCATTTGTGCCTCTTTTGCTCTTAAAGGTGTTTTCCACCCTTTCATGTCTGGCGGCGTCACCGTCCCCTCTGTCAGCACCGGCCAAGCCTTCGCTCTTGAATTCTTCATCACTTTCAATCTCCTCTTCGTTGTCACCGCCGTTGCAACCGATACTCGAGCGGTGGGAGAGTTGGCTGGGATTGCAGTCGGAGCTACAGTTATGGTGAACATTCTTGTGGCCGGGCCCTCAAGTGGTGGTTCCATGAACCCTGTTCGAACATTGGGCCCCGCCGTGGCTGCCGGAAATTACAGAGCATTATGGGTGTATCTAGTGGCACCAACGCTGGGAGCCATCGTCGGCGCGGGAACTTACACCGCCGTGAAGCTCCGAGACGACGAAGTGGATGCTCCATCTCAGGTGAGGAGCTTCCGCCGCTGA 897 57.75 MPESESGTPVPSAPATPGTPGGPLFSGLRVDSLSYDRKSMPRCKCLPVNAPTWGQPHTCFTDFPVPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYNGAETLIGNAACAGMAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWIQVPAYIAAQVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFFITFNLLFVVTAVATDTRAVGELAGIAVGATVMVNILVAGPSSGGSMNPVRTLGPAVAAGNYRALWVYLVAPTLGAIVGAGTYTAVKLRDDEVDAPSQVRSFRR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5803306 5806274 - CmaCh02G009710.1 Cma02g00971 288722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00971 298 MobiDBLite consensus disorder prediction 1 24 - -
Cma02g00971 298 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g00971 298 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g00971 298 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g00971 298 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g00971 298 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g00971 298 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g00971 298 PANTHER AQUAPORIN NIP2-1 11 296 IPR034294 -
Cma02g00971 298 PANTHER AQUAPORIN NIP5-1 ISOFORM X1-RELATED 11 296 - -
Cma02g00971 298 Pfam Major intrinsic protein 68 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g00971 298 ProSitePatterns MIP family signature. 129 137 IPR022357 -
Cma02g00971 298 SUPERFAMILY Aquaporin-like 69 286 IPR023271 -
Cma02g00971 298 Gene3D Glycerol uptake facilitator protein. 64 292 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00971 Cma15g01348 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00971 Cma-Chr2:5803306 Cma11g01024 Cma-Chr11:5571213 1.63E-71 dispersed
Cma01g00179 Cma-Chr1:791522 Cma02g00971 Cma-Chr2:5803306 1.99E-127 transposed
Cma04g00620 Cma-Chr4:3171483 Cma02g00971 Cma-Chr2:5803306 2.61E-106 transposed
Cma15g01348 Cma-Chr15:8469875 Cma02g00971 Cma-Chr2:5803306 1.82E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00971 K09874 - csv:101212651 565.459