Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00976 ATGAAATTGGTCACTGATTTGTTTCAAAATTGGCTTGACAATATGATACCACAGATGCCACAGAGTAGCATAATTATGGAGGGGATGGAAGAGGAAGCCGATAAAGATCTTATGTTGCTGCCTTCCTCTTCTCCAGTTGTAGCAGTTGCTATCAGTGGGAACAAAAACAGTAAACATATAATTAGGTGGTCCTTGGAAAAGTTTGGACACGAGGGCATCATTAGTTTCAAGTTGCTACACATCATCCCAAGGATTACTAGTGTGCCAACTCCAATGGGAAATTCAATTCCAGTTTCACAAGTTCGTGAAGATGTTGCTGCGGCTTATAGGAAAGAAATGGGGTGGCAGACAAGTGAAAAGCTTGTTCCATATAAGAAGATGTTTGCTCAGAGAAAGGTACAGCATGATGTTGTGACTCTTGAAGCAGATGATGTTGCAAATGCAATAATAGAAGAGGTTACAAGGTGTTCAATAAGGAAGCTCGTTATAGGAATTTCATCACAGGGATTTTTCTCGAGGAAACTAAACGGTCTGTCCTCAAGAATATCAGCTCATGCACCTAGATATTGTACGGTCTATGCTATTTCAAAAGGAAAATTAGCCTCAATACGGCCACCTGATATGGAGACAAGCGTGAGCATTAAAGATGATTCCAGTGAAGCAAGTTCTGCACATAGCTACTCAAGCTATTCTTCTAGCTCGCTTACAGATAGCAGTTCGAGCTTTATTACATCCTACTCTCATTTCCCTTCTCCTTCTCCTTCCCCTTCTCAACCATTACAAAGGTTTCAAGCTCTTTCAACGATCAATCAGTGTCTTCTTACTACGAAAACTAGCCCCATTGTAGCCAACCATTCTCGATGCCATTCCGTTGATATTGAGGAGCCGGTGGATTGCCTTGGATCCTCTCCCAATGTTTCATATAGTGCACAAACATTGAGTCGAGCCTCTAGTTGTAAAAGCTTGCCAACAGATTACAAGTCATGGGTTCCTGATGAAGCTTCATCATCAGGCACATTCAATGATTATGTTTCATGTGAAAGTCAGGCGGATGTCAACTTTGAGCTTGAAAAGTTGAGAATTGAACTAAGACATGCAAGAGAAATGAACGCAATTTCTCAACAAGAGACGGCCAATGCGTCTTTGAAGGTGAGGCATCTAAATAAACAACGATCAAAAGAAGCTAAGAAGCTTGAGGAGATGAACAATAAAGAGGTATCTGCTAAAGAATTTGCAAGGGAAGAGAGAGCGAATGTTGAAGCTTTGAGAAGAGAAGCAAAATTTGTAAGAGAAGGTGCTGAAACAGAGGGTATCTATAGGAAGGAAGCAGAGACGAAAGCTGTTCAAGATGCCAAAGAGAAGGGAAAGCATGAGAGTGCTCTTCATGGATATCTGCAGCAATACCAACATTTTGAATGGGAAGATATTGTATGTGCCGCATCATCTTTCTCTGAGGATCTTAGGATTGGAATGGGAGCACATGGAGCAGTTTATAAGTGTAATTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGATCACAAAAAGACTCCATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATTCATCATCCCCATTTACTACTACTCCTTGGTGCGTGTCCGGACAAGCACTGCCTGGTTTATGAGTACATGGAAAACGGTAGCCTAGAGGATAGGTTGTACCGCAGAGGCAACACACCTGCAATCCCATGGTATGAGAGGTATAGGATTGCTTGGGAAATAGCCTCTGCTCTTGTCTTTCTACACAGCTCAAAGCCGAAACCGATAATCCACCGTGATCTTAAGCCTGCAAACATCTTACTCGACCGAAACCTCGTGAGCAAAATCGGCGACGTTGGTCTATCTACTGTGCTTAATTCAGATCCTTTAATGTCTACTGCATTCAAGGATGGTGGACCAGTTGGTACTCTATGTTATATAGATCCTGAGTATCAACGAACTGGATTAATCTCACGCAAGTCTGATGTTTATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAGCCAGCAGTAGCATTAACCCATGTGGTGGAAACAGCCATTGAGAAGCGCTCCTTAATAAAGGTTCTTGATATTGAGGCTGGGCATTGGCCTATCGAAGAGACGTATGAATTGGCGAGATTGGGACTTTGGTGTGCAGAGCTACAACGTAAAGATAGGCCCAACTTAAAGGAGCAAGTACTTCCCTTGTTAGTGAGACTCAGAAAGGTTGCTGATGAGGCTCGCAATTCGGCCTCCACAGTCCCTCCTGCAATTCCTAATCATTTCATCTGTCCAATTCTTCAGGACATGATGAATGACCCTTGTGTTGCGGCGGATGGATACACATACGATCGTCGAGCAATAGAGAAATGGCTCCAAGAGAACGATATTTCACCGACGACGAAGTTGCCACTGCTAGATAAGAATTTAATACCTAATCAGGGTCTTCTCTCTTCAATTATGGAGTGGAACTCCAGAAAAGACTAA 2511 42.45 MKLVTDLFQNWLDNMIPQMPQSSIIMEGMEEEADKDLMLLPSSSPVVAVAISGNKNSKHIIRWSLEKFGHEGIISFKLLHIIPRITSVPTPMGNSIPVSQVREDVAAAYRKEMGWQTSEKLVPYKKMFAQRKVQHDVVTLEADDVANAIIEEVTRCSIRKLVIGISSQGFFSRKLNGLSSRISAHAPRYCTVYAISKGKLASIRPPDMETSVSIKDDSSEASSAHSYSSYSSSSLTDSSSSFITSYSHFPSPSPSPSQPLQRFQALSTINQCLLTTKTSPIVANHSRCHSVDIEEPVDCLGSSPNVSYSAQTLSRASSCKSLPTDYKSWVPDEASSSGTFNDYVSCESQADVNFELEKLRIELRHAREMNAISQQETANASLKVRHLNKQRSKEAKKLEEMNNKEVSAKEFAREERANVEALRREAKFVREGAETEGIYRKEAETKAVQDAKEKGKHESALHGYLQQYQHFEWEDIVCAASSFSEDLRIGMGAHGAVYKCNLHHTTVAVKVLHSRDDHKKTPFLQELEILSKIHHPHLLLLLGACPDKHCLVYEYMENGSLEDRLYRRGNTPAIPWYERYRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDRNLVSKIGDVGLSTVLNSDPLMSTAFKDGGPVGTLCYIDPEYQRTGLISRKSDVYAFGMVILQLLTAKPAVALTHVVETAIEKRSLIKVLDIEAGHWPIEETYELARLGLWCAELQRKDRPNLKEQVLPLLVRLRKVADEARNSASTVPPAIPNHFICPILQDMMNDPCVAADGYTYDRRAIEKWLQENDISPTTKLPLLDKNLIPNQGLLSSIMEWNSRKD 836
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 5829069 5836132 + CmaCh02G009760.1 Cma02g00976 288727
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00976 836 Gene3D Phosphorylase Kinase; domain 1 452 555 - -
Cma02g00976 836 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 43 832 - -
Cma02g00976 836 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 47 191 - -
Cma02g00976 836 SUPERFAMILY Protein kinase-like (PK-like) 463 739 IPR011009 -
Cma02g00976 836 CDD STK_N 46 198 - -
Cma02g00976 836 Pfam U-box domain 766 835 IPR003613 GO:0004842|GO:0016567
Cma02g00976 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 601 613 IPR008271 GO:0004672|GO:0006468
Cma02g00976 836 Gene3D Transferase(Phosphotransferase) domain 1 556 762 - -
Cma02g00976 836 CDD RING-Ubox_WDSUB1_like 770 810 - -
Cma02g00976 836 ProSitePatterns Protein kinases ATP-binding region signature. 489 510 IPR017441 GO:0005524
Cma02g00976 836 Coils Coil 384 432 - -
Cma02g00976 836 Gene3D HUPs 46 196 IPR014729 -
Cma02g00976 836 Pfam Universal stress protein family 47 192 IPR006016 -
Cma02g00976 836 SUPERFAMILY RING/U-box 754 834 - -
Cma02g00976 836 Pfam Protein tyrosine and serine/threonine kinase 488 739 IPR001245 GO:0004672|GO:0006468
Cma02g00976 836 Coils Coil 356 376 - -
Cma02g00976 836 SMART Ubox_2 769 831 IPR003613 GO:0004842|GO:0016567
Cma02g00976 836 ProSiteProfiles U-box domain profile. 765 836 IPR003613 GO:0004842|GO:0016567
Cma02g00976 836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 765 836 IPR013083 -
Cma02g00976 836 ProSiteProfiles Protein kinase domain profile. 483 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00976 836 PANTHER OS02G0152300 PROTEIN 43 832 - -
Cma02g00976 836 SMART serkin_6 483 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00976 Cma-Chr2:5829069 Cma05g01403 Cma-Chr5:10466879 2.01E-138 dispersed
Cma15g01353 Cma-Chr15:8506181 Cma02g00976 Cma-Chr2:5829069 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68353 PF07714 PK_Tyr_Ser-Thr 8.20E-40 CL0016 Cma PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00976 - - mcha:111025865 1214.91