Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g00976 | ATGAAATTGGTCACTGATTTGTTTCAAAATTGGCTTGACAATATGATACCACAGATGCCACAGAGTAGCATAATTATGGAGGGGATGGAAGAGGAAGCCGATAAAGATCTTATGTTGCTGCCTTCCTCTTCTCCAGTTGTAGCAGTTGCTATCAGTGGGAACAAAAACAGTAAACATATAATTAGGTGGTCCTTGGAAAAGTTTGGACACGAGGGCATCATTAGTTTCAAGTTGCTACACATCATCCCAAGGATTACTAGTGTGCCAACTCCAATGGGAAATTCAATTCCAGTTTCACAAGTTCGTGAAGATGTTGCTGCGGCTTATAGGAAAGAAATGGGGTGGCAGACAAGTGAAAAGCTTGTTCCATATAAGAAGATGTTTGCTCAGAGAAAGGTACAGCATGATGTTGTGACTCTTGAAGCAGATGATGTTGCAAATGCAATAATAGAAGAGGTTACAAGGTGTTCAATAAGGAAGCTCGTTATAGGAATTTCATCACAGGGATTTTTCTCGAGGAAACTAAACGGTCTGTCCTCAAGAATATCAGCTCATGCACCTAGATATTGTACGGTCTATGCTATTTCAAAAGGAAAATTAGCCTCAATACGGCCACCTGATATGGAGACAAGCGTGAGCATTAAAGATGATTCCAGTGAAGCAAGTTCTGCACATAGCTACTCAAGCTATTCTTCTAGCTCGCTTACAGATAGCAGTTCGAGCTTTATTACATCCTACTCTCATTTCCCTTCTCCTTCTCCTTCCCCTTCTCAACCATTACAAAGGTTTCAAGCTCTTTCAACGATCAATCAGTGTCTTCTTACTACGAAAACTAGCCCCATTGTAGCCAACCATTCTCGATGCCATTCCGTTGATATTGAGGAGCCGGTGGATTGCCTTGGATCCTCTCCCAATGTTTCATATAGTGCACAAACATTGAGTCGAGCCTCTAGTTGTAAAAGCTTGCCAACAGATTACAAGTCATGGGTTCCTGATGAAGCTTCATCATCAGGCACATTCAATGATTATGTTTCATGTGAAAGTCAGGCGGATGTCAACTTTGAGCTTGAAAAGTTGAGAATTGAACTAAGACATGCAAGAGAAATGAACGCAATTTCTCAACAAGAGACGGCCAATGCGTCTTTGAAGGTGAGGCATCTAAATAAACAACGATCAAAAGAAGCTAAGAAGCTTGAGGAGATGAACAATAAAGAGGTATCTGCTAAAGAATTTGCAAGGGAAGAGAGAGCGAATGTTGAAGCTTTGAGAAGAGAAGCAAAATTTGTAAGAGAAGGTGCTGAAACAGAGGGTATCTATAGGAAGGAAGCAGAGACGAAAGCTGTTCAAGATGCCAAAGAGAAGGGAAAGCATGAGAGTGCTCTTCATGGATATCTGCAGCAATACCAACATTTTGAATGGGAAGATATTGTATGTGCCGCATCATCTTTCTCTGAGGATCTTAGGATTGGAATGGGAGCACATGGAGCAGTTTATAAGTGTAATTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGATCACAAAAAGACTCCATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATTCATCATCCCCATTTACTACTACTCCTTGGTGCGTGTCCGGACAAGCACTGCCTGGTTTATGAGTACATGGAAAACGGTAGCCTAGAGGATAGGTTGTACCGCAGAGGCAACACACCTGCAATCCCATGGTATGAGAGGTATAGGATTGCTTGGGAAATAGCCTCTGCTCTTGTCTTTCTACACAGCTCAAAGCCGAAACCGATAATCCACCGTGATCTTAAGCCTGCAAACATCTTACTCGACCGAAACCTCGTGAGCAAAATCGGCGACGTTGGTCTATCTACTGTGCTTAATTCAGATCCTTTAATGTCTACTGCATTCAAGGATGGTGGACCAGTTGGTACTCTATGTTATATAGATCCTGAGTATCAACGAACTGGATTAATCTCACGCAAGTCTGATGTTTATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAGCCAGCAGTAGCATTAACCCATGTGGTGGAAACAGCCATTGAGAAGCGCTCCTTAATAAAGGTTCTTGATATTGAGGCTGGGCATTGGCCTATCGAAGAGACGTATGAATTGGCGAGATTGGGACTTTGGTGTGCAGAGCTACAACGTAAAGATAGGCCCAACTTAAAGGAGCAAGTACTTCCCTTGTTAGTGAGACTCAGAAAGGTTGCTGATGAGGCTCGCAATTCGGCCTCCACAGTCCCTCCTGCAATTCCTAATCATTTCATCTGTCCAATTCTTCAGGACATGATGAATGACCCTTGTGTTGCGGCGGATGGATACACATACGATCGTCGAGCAATAGAGAAATGGCTCCAAGAGAACGATATTTCACCGACGACGAAGTTGCCACTGCTAGATAAGAATTTAATACCTAATCAGGGTCTTCTCTCTTCAATTATGGAGTGGAACTCCAGAAAAGACTAA | 2511 | 42.45 | MKLVTDLFQNWLDNMIPQMPQSSIIMEGMEEEADKDLMLLPSSSPVVAVAISGNKNSKHIIRWSLEKFGHEGIISFKLLHIIPRITSVPTPMGNSIPVSQVREDVAAAYRKEMGWQTSEKLVPYKKMFAQRKVQHDVVTLEADDVANAIIEEVTRCSIRKLVIGISSQGFFSRKLNGLSSRISAHAPRYCTVYAISKGKLASIRPPDMETSVSIKDDSSEASSAHSYSSYSSSSLTDSSSSFITSYSHFPSPSPSPSQPLQRFQALSTINQCLLTTKTSPIVANHSRCHSVDIEEPVDCLGSSPNVSYSAQTLSRASSCKSLPTDYKSWVPDEASSSGTFNDYVSCESQADVNFELEKLRIELRHAREMNAISQQETANASLKVRHLNKQRSKEAKKLEEMNNKEVSAKEFAREERANVEALRREAKFVREGAETEGIYRKEAETKAVQDAKEKGKHESALHGYLQQYQHFEWEDIVCAASSFSEDLRIGMGAHGAVYKCNLHHTTVAVKVLHSRDDHKKTPFLQELEILSKIHHPHLLLLLGACPDKHCLVYEYMENGSLEDRLYRRGNTPAIPWYERYRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDRNLVSKIGDVGLSTVLNSDPLMSTAFKDGGPVGTLCYIDPEYQRTGLISRKSDVYAFGMVILQLLTAKPAVALTHVVETAIEKRSLIKVLDIEAGHWPIEETYELARLGLWCAELQRKDRPNLKEQVLPLLVRLRKVADEARNSASTVPPAIPNHFICPILQDMMNDPCVAADGYTYDRRAIEKWLQENDISPTTKLPLLDKNLIPNQGLLSSIMEWNSRKD | 836 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5829069 | 5836132 | + | CmaCh02G009760.1 | Cma02g00976 | 288727 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g00976 | 836 | Gene3D | Phosphorylase Kinase; domain 1 | 452 | 555 | - | - | |
Cma02g00976 | 836 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 35 | 43 | 832 | - | - | |
Cma02g00976 | 836 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 47 | 191 | - | - | |
Cma02g00976 | 836 | SUPERFAMILY | Protein kinase-like (PK-like) | 463 | 739 | IPR011009 | - | |
Cma02g00976 | 836 | CDD | STK_N | 46 | 198 | - | - | |
Cma02g00976 | 836 | Pfam | U-box domain | 766 | 835 | IPR003613 | GO:0004842|GO:0016567 | |
Cma02g00976 | 836 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 601 | 613 | IPR008271 | GO:0004672|GO:0006468 | |
Cma02g00976 | 836 | Gene3D | Transferase(Phosphotransferase) domain 1 | 556 | 762 | - | - | |
Cma02g00976 | 836 | CDD | RING-Ubox_WDSUB1_like | 770 | 810 | - | - | |
Cma02g00976 | 836 | ProSitePatterns | Protein kinases ATP-binding region signature. | 489 | 510 | IPR017441 | GO:0005524 | |
Cma02g00976 | 836 | Coils | Coil | 384 | 432 | - | - | |
Cma02g00976 | 836 | Gene3D | HUPs | 46 | 196 | IPR014729 | - | |
Cma02g00976 | 836 | Pfam | Universal stress protein family | 47 | 192 | IPR006016 | - | |
Cma02g00976 | 836 | SUPERFAMILY | RING/U-box | 754 | 834 | - | - | |
Cma02g00976 | 836 | Pfam | Protein tyrosine and serine/threonine kinase | 488 | 739 | IPR001245 | GO:0004672|GO:0006468 | |
Cma02g00976 | 836 | Coils | Coil | 356 | 376 | - | - | |
Cma02g00976 | 836 | SMART | Ubox_2 | 769 | 831 | IPR003613 | GO:0004842|GO:0016567 | |
Cma02g00976 | 836 | ProSiteProfiles | U-box domain profile. | 765 | 836 | IPR003613 | GO:0004842|GO:0016567 | |
Cma02g00976 | 836 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 765 | 836 | IPR013083 | - | |
Cma02g00976 | 836 | ProSiteProfiles | Protein kinase domain profile. | 483 | 745 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma02g00976 | 836 | PANTHER | OS02G0152300 PROTEIN | 43 | 832 | - | - | |
Cma02g00976 | 836 | SMART | serkin_6 | 483 | 745 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00976 | Cma-Chr2:5829069 | Cma05g01403 | Cma-Chr5:10466879 | 2.01E-138 | dispersed | |
Cma15g01353 | Cma-Chr15:8506181 | Cma02g00976 | Cma-Chr2:5829069 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68353 | PF07714 | PK_Tyr_Ser-Thr | 8.20E-40 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g00976 | - | - | mcha:111025865 | 1214.91 |