Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00988 ATGGCTCAAAACCTCCATTTTCCCATCCTTGTAATTTCCTTCACCATTTTGCTATCAATTTCCCCATCTTTCTCAGCCCCTAACGCCAAGGATTTATGGTGCAGCCAAACCCCATACCCCGACGTCTGCAAGAGCTTCTTCAAAGCCAAATTCAACCCAAAAAATCTGGCCGAGTTCAAAAAAACCGCCTTCAAAATCGCCATGGAAAGGGCCCTCACAGCCGAGACGCTCACCAAGCGCCACGCCCAGAAATGCCGCACCCCAAAGGAAAAAGGCGCGTGGGCCGACTGCTTGGAGCTTTACCAAGACACCATCCTCCACCTCAACCGAACTTTCTCCGACAACTACTGCTCCGATTTCGACATCCAAACCTGGCTCAGCTCCGCGTTGACTAATCTTGAGACATGTCGTGCCGGATTCGTTGACCTTAATATTAAGGATTACGACGTCGTTTTTCCTTTTCTTTCGAGGAGTAACAATGTGACTAAGTTGATTAGGAATAGTTTGGCTATGAATAACTGCTCTGAGACGGAGACGGGTTATCATGGTGGCTTTCCTACGTGGGTTAAGGCTGGTGAACGGCGGCTGCTGCAGGCGGCGGTTCCTAAGGCGGACTTGGTTGTGGCGCTTGATGGGTCTGGGAATTATAAGACGGTGCAGGCCGCGGTGGATGCGGCGGCGAAGAGGAAAGGGAGTGGGAGATTTGTGATACATGTTAAGAAAGGGGTTTATAAGGAGAATGTTGTGATTGGGAATAAGGTCAAGAATTTGATGCTCGTCGGAGATGGGTTGAAATATACCATTATTACTGGGAGTAGGAGTGTCGGCGGCGGCTCCACAACGTTCAACTCAGCCACCGTCGCTGTTACTGGGGAAGGATTCATTGCTCGTGGCATCACCTTCCGCAACACGGCCGGACCCGAAAACCACCAAGCAGTAGCCCTCCGATCAGGCTCGGATCTCTCCGTCTTCTACCGCTGCAGCTTCGAGGGATATCAAGACACTCTCTACGTCCACTCCCAAAGACAGTTCTATAGAGAATGCTACATTTACGGCACAGTCGACTTCATCTTCGGCAACGCAGCCGTGGTACTCCAAAACTGCATGATCTACGCGAGAAAACCAATGTCAGGTCAGCAATGCGTGGTAACAGCGCAAGGCCGATCAGACCCAAATCAGAACACCGGAATCTCAATCCACAACTCGAGAGTGATGGCCACGGCCGACCTCCAACCGGTGCTAAGCTCGGTGAGAACCTACCTGGGGAGGCCATGGAGGGAGTACTCCCGGACGGTTTACTTGCAGTGCTTCATGGATAGCTTGGTGAACCCTGCAGGATGGCTGGAATGGAGTGGGGACTTTGCCCTGAATACGCTCTATTATGGAGAGTTCAAGAACTTTGGGCCTGGTTCGTCCACTGCTAAGCGAGTGAAGTGGAAGGGTTACAGAGTGATAACAAGCGCCGCCGAAGCTTCCAAGTTTACCGTCGGGAGCTTCATCGCCGGGAAGTCATGGCTGCCGGCAACTGGCGTGCCGTTCACTGCTGGGCTTTGA 1554 52.12 MAQNLHFPILVISFTILLSISPSFSAPNAKDLWCSQTPYPDVCKSFFKAKFNPKNLAEFKKTAFKIAMERALTAETLTKRHAQKCRTPKEKGAWADCLELYQDTILHLNRTFSDNYCSDFDIQTWLSSALTNLETCRAGFVDLNIKDYDVVFPFLSRSNNVTKLIRNSLAMNNCSETETGYHGGFPTWVKAGERRLLQAAVPKADLVVALDGSGNYKTVQAAVDAAAKRKGSGRFVIHVKKGVYKENVVIGNKVKNLMLVGDGLKYTIITGSRSVGGGSTTFNSATVAVTGEGFIARGITFRNTAGPENHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVLQNCMIYARKPMSGQQCVVTAQGRSDPNQNTGISIHNSRVMATADLQPVLSSVRTYLGRPWREYSRTVYLQCFMDSLVNPAGWLEWSGDFALNTLYYGEFKNFGPGSSTAKRVKWKGYRVITSAAEASKFTVGSFIAGKSWLPATGVPFTAGL 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5875752 5878375 - CmaCh02G009880.1 Cma02g00988 288739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00988 517 CDD PMEI-like_3 32 173 - -
Cma02g00988 517 PANTHER PECTINESTERASE 7 516 - -
Cma02g00988 517 PANTHER PECTINESTERASE 7 516 - -
Cma02g00988 517 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 173 IPR006501 GO:0004857
Cma02g00988 517 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 174 IPR035513 -
Cma02g00988 517 Pfam Plant invertase/pectin methylesterase inhibitor 33 171 IPR006501 GO:0004857
Cma02g00988 517 Pfam Pectinesterase 205 502 IPR000070 GO:0030599|GO:0042545
Cma02g00988 517 SMART PMEI_2 25 171 IPR006501 GO:0004857
Cma02g00988 517 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 174 IPR035513 -
Cma02g00988 517 ProSitePatterns Pectinesterase signature 1. 231 250 IPR018040 -
Cma02g00988 517 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
Cma02g00988 517 Gene3D - 200 517 IPR012334 -
Cma02g00988 517 SUPERFAMILY Pectin lyase-like 200 516 IPR011050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00988 Cma04g00334 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00988 Cma-Chr2:5875752 Cma04g00334 Cma-Chr4:1639073 0 dispersed
Cma06g01146 Cma-Chr6:7721885 Cma02g00988 Cma-Chr2:5875752 1.50E-129 dispersed
Cma13g00952 Cma-Chr13:7471802 Cma02g00988 Cma-Chr2:5875752 7.72E-16 dispersed
Cma15g00967 Cma-Chr15:5369571 Cma02g00988 Cma-Chr2:5875752 1.89E-53 dispersed
Cma02g00988 Cma-Chr2:5875752 Cma14g01967 Cma-Chr14:13840381 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00988 K01051 - csv:101216005 843.573