Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01003 ATGGATGCAGCATCTTTGAGTTCTTCTAATGCTGGTCGATCGCGCTGTCCCCTGCAAGAACAGCATCTCCAGAAAAAGCATTCCCGAGAAAATTTGGATAGATTTATTCCGAATCGATCGGCGATGGATTTCGATTACGCGCATTACATGGTGACTGATGGGAGGAAAGGTAAGGAAAATTCTTCAATTTGTTCGCCCTCAAGGGAGGCTTATCAGAAGCGTTTGGCTGAGACGTTGAACATGAATCGAACTCGGATCCTTGCGTTCAGAAACAAACCTCCTGCACCAGTTGAGTTGATCCCCAAGGAGTTCTTCTCCTCGGGTTCTAACGACAAACCTGTCAAGGCCCGCCGCCATATCCCCCAGACCTCTGAAAGGACATTGGATGCTCCTGATCTTGTTGATGATTACTACTTGAACTTGTTGGATTGGGGCAGCGCCAATGTGCTTGCTATTGCTCTTGGCAACACTGTGTATTTGTGGAATGCAAACGATGGCTCTACTTCAGAACTTGTCACTGTTGATGATGAAGTTGGTCCTATCACTAGTGTCAACTGGGCACCTGATGGACGACACATCGCTATTGGGTTTCATAACTCTGAAGTGCAGCTCTGGGATTCAACTGCTAACCGACAGCTAAGAACTCTAAGAGGTGGGCACAGGATGCGAGTGGGTTCACTGGCATGGAACAACCACATTCTCACCACAGGAGGAATGGATGGAAAGATCATAAACAATGATGTGAGAATAAGAGATCATATAGTTGGGACTTACAGAGGTCATGATCAAGAAGTTTGTGGACTCAAATGGTCATTATCAGGGCAACAATTAGCAAGTGGAGGAAATGACAATGTCCTCCACATTTGGGACCGATCAATGGCCTCTTCAAACTCAGCAACCCAGTGGCTTCACAGGCTTGAGGATCATACATCTGCAGTCAAGGCTCTTGCATGGTGTCCATTCCAAAGCAACTTGCTCGCAACCGGTGGAGGTGCTAGTGACCGCACCATAAAGTTTTGGAACACGCACACTGGCGCATGTTTGAATTCTGTTGATACTGGTTCTCAAGTCTGTGCTCTGCTGTGGAATAAAAATGAGAGAGAGCTGCTTAGCTCTCATGGGTTCTCCCAGAATCAGCTCACTCTTTGGAAGTACCCTTCAATGGTGAAGATGGGAGAGCTCACCGGCCATACATCAAGAGTTCTCTTTATGGCTCAGAGTCCAGATGGGTGCACTGTGGCTTCAGCAGCAGCTGATGAAACATTGAGATTCTGGAATGTTTTTGGGGCTCCAGAAGTGGCTAAACCTGCTGCAAAATCCTACAATGCAGAGCCCTTTGCTCATATCAATCGCATTCGATAA 1362 46.99 MDAASLSSSNAGRSRCPLQEQHLQKKHSRENLDRFIPNRSAMDFDYAHYMVTDGRKGKENSSICSPSREAYQKRLAETLNMNRTRILAFRNKPPAPVELIPKEFFSSGSNDKPVKARRHIPQTSERTLDAPDLVDDYYLNLLDWGSANVLAIALGNTVYLWNANDGSTSELVTVDDEVGPITSVNWAPDGRHIAIGFHNSEVQLWDSTANRQLRTLRGGHRMRVGSLAWNNHILTTGGMDGKIINNDVRIRDHIVGTYRGHDQEVCGLKWSLSGQQLASGGNDNVLHIWDRSMASSNSATQWLHRLEDHTSAVKALAWCPFQSNLLATGGGASDRTIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFSQNQLTLWKYPSMVKMGELTGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPEVAKPAAKSYNAEPFAHINRIR 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5963564 5966209 - CmaCh02G010030.1 Cma02g01003 288754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01003 453 MobiDBLite consensus disorder prediction 1 30 - -
Cma02g01003 453 Pfam WD domain, G-beta repeat 303 341 IPR001680 GO:0005515
Cma02g01003 453 Pfam WD domain, G-beta repeat 391 426 IPR001680 GO:0005515
Cma02g01003 453 Pfam WD domain, G-beta repeat 255 290 IPR001680 GO:0005515
Cma02g01003 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 215 IPR001680 GO:0005515
Cma02g01003 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 394 427 - -
Cma02g01003 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 427 IPR001680 GO:0005515
Cma02g01003 453 Gene3D - 82 429 IPR015943 GO:0005515
Cma02g01003 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 350 IPR001680 GO:0005515
Cma02g01003 453 ProSitePatterns Trp-Asp (WD) repeats signature. 413 427 IPR019775 -
Cma02g01003 453 SMART WD40_4 387 426 IPR001680 GO:0005515
Cma02g01003 453 SMART WD40_4 344 384 IPR001680 GO:0005515
Cma02g01003 453 SMART WD40_4 209 247 IPR001680 GO:0005515
Cma02g01003 453 SMART WD40_4 167 206 IPR001680 GO:0005515
Cma02g01003 453 SMART WD40_4 299 341 IPR001680 GO:0005515
Cma02g01003 453 SMART WD40_4 251 290 IPR001680 GO:0005515
Cma02g01003 453 CDD WD40 156 426 - -
Cma02g01003 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 290 IPR001680 GO:0005515
Cma02g01003 453 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 1 451 IPR033010 GO:0010997|GO:0097027|GO:1904668
Cma02g01003 453 SUPERFAMILY WD40 repeat-like 138 426 IPR036322 GO:0005515
Cma02g01003 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 290 - -
Cma02g01003 453 PANTHER CELL DIVISION CYCLE 20.2, COFACTOR OF APC COMPLEX-LIKE 1 451 - -
Cma02g01003 453 Pfam Anaphase-promoting complex subunit 4 WD40 domain 173 231 IPR024977 -
Cma02g01003 453 ProSitePatterns Trp-Asp (WD) repeats signature. 328 342 IPR019775 -
Cma02g01003 453 MobiDBLite consensus disorder prediction 1 17 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01003 K03363 CDC20; cell division cycle 20, cofactor of APC complex - csv:101208421 865.914
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01003 Cma15g01239 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01003 Cma-Chr2:5963564 Cma02g01625 Cma-Chr2:9209156 0 dispersed
Cma02g01003 Cma-Chr2:5963564 Cma02g01496 Cma-Chr2:8546031 3.96E-114 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g12 . . . . . Bpe07g00103 . Bma14g00607 . . Cma02g01003 Cma15g01239 . Car15g01116 . . Cpe05g00349 . . . . . . . . . . . . . . . Cone12ag0296 . . . Csa05g00265 Chy09g01243 . . . Bda07g00483 . . Bpe11g00660 . . . Cmo02g01472 Cmo15g01303 . . . . . Cpe13g00146 Bhi12g00284 . . . . . . Cla01g00249 Cam01g0254 Cec01g0246 Cco01g0260 Clacu01g0252 Cmu01g0242 Cre09g2267 Lsi09g00240 . . Cme09g01778
Vvi16g175 . . . . . . . . . . Cma02g01003 . Car02g00748 . . Cpe05g00717 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g01018 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001497 1 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 3 2 1 2 1 2 3 4 2 2 5 3 6 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01003 Cma_Chr02 FPKM 20.802794 20.562334 1.604347 1.716503 28.063248 32.027256 29.714193 1.921667 1.78132 1.777567