Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01007 ATGGAGGAGAAAGAGGGTGTTGATTTCGGATTTGCATTAAAAGTGAGCCAAGCTCCAGATAGCTTCGGGATGATGGATTCGAGACCTGAAAATACAAGCACGGACAGCGAGCCACCTCCTCCTCCTCCGCCTCCGCCGCCGGCGACGGCGACGGCGACGGTGGAAGCAGCTCTGACGCTGGCGGGTACAGATGGAAAGAAGAAAAGAGGGAGGCCGAGAAAGTACGGACCCGATGGAACTGTAGTGCCAACATTGTCGCCAATGCCGATTTCATCATCGATTCCACTGACGGGAGAGTTTCCGGGATGGAAACGGGGAAGGGGGAGGTCAGTAGAATCGCTCAAGAAGTCGCGGAAGTACGATTATGAGATTCCAGGTAACAAGGTTGCCTTCTTTGCTGGAGCAGATTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGATGTTAACTTGAAAGTAATGTCATTTTCTCAACAAGGATCTCGGGCCATTTGTATACTCTCTGCTAATGGTCTGGTTTCAAATGTCACACTTCGGCTGTCAACATCTTCTGGGGGTACTCTAACATATGAGGGTCGATTTGAGATACTTTCGTTATCTGGATCATATATGCCTTCCAAGATTGGTGGAACAAAGAGCCGATCCGGAGGGATGAGTGTCTCTTTGGCTTGCCCAGATGGCCGAGTAATGGGTGGAGGACTTTCCGGCATGCTAATAGCAGCTGGTCCAGTGCAGGTGGTTGTGGGCAGTTTCCAACCACCAGGCCATCAACAGGAGAATAAACCAAAGAAGAGCAGGATGGAACCTACATCAAATGCAATTTCACCTCCTCCCGCTATTAAGCTCATAGGAGATAAAACAGATTCTTTTGACCCAAATCCAGCTTTTAGAACTTCACCAGTCAACGAAAAACCACCTTCTCCAGAAGAAACAAGAGTTGTCCTCAACCATTCAAACCATGAGACTGGTCTTGAGGTGAAGAGAATGATGAGAATGATCAAATTGAAGATGCAGAAGATGAACAGAGTGCTGGAAGCCGCCTCGGCAGCTAGTTCCAAAATGGAATCAGCCATGGCTGAAAATTTTGGTTAA 1095 48.13 MEEKEGVDFGFALKVSQAPDSFGMMDSRPENTSTDSEPPPPPPPPPPATATATVEAALTLAGTDGKKKRGRPRKYGPDGTVVPTLSPMPISSSIPLTGEFPGWKRGRGRSVESLKKSRKYDYEIPGNKVAFFAGADFTPHVITVNIGEDVNLKVMSFSQQGSRAICILSANGLVSNVTLRLSTSSGGTLTYEGRFEILSLSGSYMPSKIGGTKSRSGGMSVSLACPDGRVMGGGLSGMLIAAGPVQVVVGSFQPPGHQQENKPKKSRMEPTSNAISPPPAIKLIGDKTDSFDPNPAFRTSPVNEKPPSPEETRVVLNHSNHETGLEVKRMMRMIKLKMQKMNRVLEAASAASSKMESAMAENFG 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5983347 5990109 + CmaCh02G010070.1 Cma02g01007 288758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01007 364 MobiDBLite consensus disorder prediction 34 50 - -
Cma02g01007 364 ProSiteProfiles PPC domain profile profile. 134 273 IPR005175 -
Cma02g01007 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 9 284 - -
Cma02g01007 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 284 IPR039605 GO:0003680
Cma02g01007 364 MobiDBLite consensus disorder prediction 250 313 - -
Cma02g01007 364 Gene3D - 139 269 - -
Cma02g01007 364 Pfam Plants and Prokaryotes Conserved (PCC) domain 139 253 IPR005175 -
Cma02g01007 364 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 265 - -
Cma02g01007 364 MobiDBLite consensus disorder prediction 1 93 - -
Cma02g01007 364 CDD DUF296 138 252 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01007 Cma18g01194 CCT
Cma02g01007 Cma18g01194 ECH
Cma02g01007 Cma15g01221 CST
Cma02g01007 Cma15g01381 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01007 Cma-Chr2:5983347 Cma06g01133 Cma-Chr6:7636265 3.18E-76 dispersed
Cma15g01381 Cma-Chr15:8645120 Cma02g01007 Cma-Chr2:5983347 3.40E-166 wgd
Cma18g01194 Cma-Chr18:9477137 Cma02g01007 Cma-Chr2:5983347 5.18E-101 wgd
Cma02g01007 Cma-Chr2:5983347 Cma02g01510 Cma-Chr2:8610196 5.62E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01007 - - csv:101211908 469.544