Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01014 ATGCTCCAATCAAAATCCCAAATAAATCCTCAACCTTGCCCTAGCTTCCAATCTCCATCTTCCTCGACCCTAAATCCTCCAACTGAAAAACCTAGCAGCGGTACCCACCCCTTGCGCCGGAAGTTAGCGACAATGGCGTATGCAGCGATGAAGCCTACGAAGGCTGGATTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAGAAGGTCTGTGCTGATTTGGTTAGGGGTGCCAAGGACAAGAGATTGAGGGTCAAGGGACCTGTGAGGATGCCAACGAAAGTCCTGCACATCACCACCAGGAAATCTCCATGCGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGGGTCATCGACCTCTTTAGCTCTGCCGATGTTGTTAAGCAGATTACATCTATCACCATTGAACCAGGTGTCGAGGTTGAAGTAACAATTGCTGATTGA 498 48.8 MLQSKSQINPQPCPSFQSPSSSTLNPPTEKPSSGTHPLRRKLATMAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6020648 6024237 + CmaCh02G010140.1 Cma02g01014 288765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01014 165 ProSitePatterns Ribosomal protein S10 signature. 90 105 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cma02g01014 165 Gene3D Ribosomal protein S10 domain 50 165 IPR036838 -
Cma02g01014 165 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 45 165 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cma02g01014 165 Hamap 30S ribosomal protein S10 [rpsJ]. 64 163 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cma02g01014 165 SMART Ribosomal_S10_2 68 162 IPR027486 -
Cma02g01014 165 MobiDBLite consensus disorder prediction 1 32 - -
Cma02g01014 165 TIGRFAM uS10_euk_arch: ribosomal protein uS10 65 163 IPR005729 GO:0003735|GO:0006412|GO:0015935
Cma02g01014 165 PRINTS Ribosomal protein S10 family signature 123 137 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cma02g01014 165 PRINTS Ribosomal protein S10 family signature 66 79 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cma02g01014 165 PRINTS Ribosomal protein S10 family signature 101 116 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cma02g01014 165 MobiDBLite consensus disorder prediction 1 39 - -
Cma02g01014 165 Pfam Ribosomal protein S10p/S20e 68 162 IPR027486 -
Cma02g01014 165 PANTHER RIBOSOMAL PROTEIN S10-RELATED 45 165 - -
Cma02g01014 165 SUPERFAMILY Ribosomal protein S10 66 163 IPR036838 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01014 Cma04g00323 CCT
Cma02g01014 Cma15g01385 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01094 Cma-Chr1:8046261 Cma02g01014 Cma-Chr2:6020648 3.25E-09 dispersed
Cma02g01014 Cma-Chr2:6020648 Cma04g00323 Cma-Chr4:1593757 5.48E-84 dispersed
Cma15g01385 Cma-Chr15:8678411 Cma02g01014 Cma-Chr2:6020648 4.04E-87 wgd
Cma16g00181 Cma-Chr16:793823 Cma02g01014 Cma-Chr2:6020648 1.25E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01014 K02969 - sind:105160574 240.736