Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g01015 | ATGTCCGAACCACCTCCCTCCGTCTTCGATCATGATCCCTCCCCCTCCGCCGCCAAGCTCCGCAAGATCCCTCCCATCCCTATTCGCCGCGATACCAAACCCAATGCCGGAGACTTTGATCCCGATCAAGAACATGACCACGCCGAGGATCATCCTCCTCAACCTGGCGATTCGTCCATCATAATGGCCTCCTCCCTCGGGTTGAACCACATTCGGACGCGGTCTGCTCCTCTTCCGCTTCGGACTTGTGCCGTTGGCACGCCCTCCAATTTGGGCGATGATTCCAGGAATAATGTCGCCGACGGGAGTGAGTCGGAGCCAAAAAATTCCTCCACTGAACAGGGGACAAACGTTCCGTGGAGTCAACCGAACTCTTTAAGATATCCGTCGGCTCTGAATCATGATATTGAGGGTCATCATGCAGCATATACAAAGGAAATTCAGTCTCCACGATTCCGTGCAATACTGCGTGTTACTAGTGGAAGAAAGAAGAGAACCCCTGATATCAAAAGCTTCTCTCACGAGCTCAATTCCAAAGGAGTTCGCCCTTTTCCAGTTTGGAAGCCTCGGGCATTTGGACATTTGGAAGAGATCATGGTGGCTATCAGAGCAAAATTTGACAGGTTGAAGGATGATGTTAACTACGAACTGGGCATTTTTGCTGGAGATCTTGTAGATATACTTGAAAAGGCAGATCAATCCATGCCTGAACTTAAGGAGGGTTTGGAGGATTTGTTGGTGGTTGCTCGGAAATGTGCGACAATGTCCCCTACTGAATTCTGGACAAAAGGTGAAGGCATTGTCCAGAATCTAGATGACCGGCGCCAGGAGCTGTCATTAGGAATTCTTAAGCAAGCCCACACCCGCCTTCTTTTCATCCTGACACGATGTACGCGGCTTATTCAGTTCAGAAAGGAGAGTGGTTATGAAGATGAGCACATTTTGGGTCTTCATCAGCTTAGTGATCTAGGAATTTATCCAGAGAAAATCAGGCAGCTCGAACAACTTGAGTTTGGTGATCCATTGACTGGGAAAGAAGATATTGCGAAGCAGCTGAAGTTAGCTGGGAAGGATCAAGCCCATCGCATTGTGAAGCAAGATTCAGAACAAACTTTTAGTAATAGTGCTGGAAATGTTAGTCTGGACTCGGCCGTAAGTTTTGATTCATCTACAAGCATGTATAGGATGGCATCCTGGAAAAAGCTACCATCAGCAGCTGAGAAGAACCGGAAAGAGTCTGACCCTGTCGATACAACACATGCCAAGGATAAAATTGAGGTGTTGCATGTACATGAAGCTAAAACTGGGAGCAATGACAAATTAGATATCCCATCTAGTCATATTGAGCATTCAGAAGCACCCCCTAAAGAACAAAAAGTATCTTGGGGAATATGGGGTTATCATCAAAATGCCAATTTTGAGAGTTTGATGATCTGTCGGATTTGTGAGGTTGAAATTCCGACTATTCATGTTGAGGTGCATTCTCGAATTTGTACTATTGCCGATAGGTGTGATTTGAAAGGTTTAACTGTGAATGAGCGCCTTGAGCGGGTTGCTAGAGCTCTTGAAAAGATACTAGAGTCTTGGACGCCTAAAAGTACACCAAGAAGTAGCGATACTTCCTGTGCAAATTTTGATACTGTTAAGGTTTCTACATCAAATATGCAAGAAGAGATTTTTGAGTTGTCATCTAAAGGAATCAGTGTGTCATGTCGAAACTCTGAAGAGCTGCTTGATTCCCTCCCTGTTACTGGAAACTCTTCCTTTGTGGAAAGTCAGGATATTTTTCAGGATCCATCATACAATCGACCATTTATTTTCACACCAGAACACAGTACAAAATCAATGTCAGCTGGAACTCTAACACCAAGATCACCTCTTTTAACACCCAGATCCAGTCAGATTGAATTGCTGTTGCATGGGCGAAGAGCAATATCTGAACTTGAAAATTATCAGCAGATATACAAATTGTTGGATATTGTTCGTTCCATTGCAAACGTTAACAACTCTGGCTATGGTGCATTGGAGTGTATGCTCGATCGATTAGAAGACCTTAAATATGCAATCCAGGATAGGAAGGTCGATGCCCTTGTTGTGGAGACTTTTGGAAGGCGCATAGAGAAGCTCTTGCAGGAAAAATATGTACAACTTTGTGGGCAAATAGAAGATGATAAAGTAGACTCTTCAGTTGGCATAGTTGATGAAGAGAGTTCAGTGGAAGATGATACTGTTCGTAGTCTGCGTGCAAGTCCGGTTAACCCATGTTCAAAAGATCGAACATCTATTGAAGATTTTGAAATAATCAAACCAATTAGTAGAGGGGCCTATGGCCGAGTTTTCCTTGCCAGAAAACGAGCAACTGGAGACTTATTTGCAATAAAGGTTTTAAAGAAGGCTGATATGATTCGCAAGAATGCAGTTGAAAGTATTTTGGCTGAACGCAATATCCTTATCTCAGTTCGCAACCCTTTTGTGGTCCGCTTTTTCTACTCTTTCACATGTAGGGAAAATCTGTATCTGGTCATGGAATACTTAAATGGTGGTGATATCTACTCCTTACTGAGAAACCTAGGGTGCTTAGATGAAGATATGGCTCGGATTTATATCGCTGAAATTGTTCTTGCTTTGGAGTATTTGCACTCTTTAAATGTGATTCACAGAGACTTAAAGCCAGATAACTTATTGATTGGCCAAGATGGTCACATTAAGTTGACAGATTTTGGGCTCTCCAAGATTGGTCTTATCAATAGTACAGATGATTTCTCAGGTCCATCAATCAATGGAACTGTTCCGCTTGGAGACAATGGACCTATATCTCAATCTTTGTCAAAAAGAGAACACCGACAAAAGCATTCAGTTGTTGGTACTCCAGATTATTTGGCCCCAGAGATACTTCTGGGCATGGGACATGGTGTAACTGCGGATTGGTGGTCTGTTGGAGTAATTCTTTTTGAGATGCTTGTAGGACTACCGCCGTTCAATGCAGAAAGTCCACAGCTAATTTTTGATAATATCATTAATAGAGACATACCATGGCCCAAGGTACCGGACGAGATGAGTTATGAAGCCCAGGATTTGATTGACAAATTGCTGACTGAAAATTCAGTTCAAAGACTGGGAGCTACAGGAGCCAGAGAGGTGAAGCAACATCCTTTCTTCAAGGATATTAATTGGGAAACACTTGCAAGGCAGAAGGCCATGTTTATACCATCAGCAGAGCCACATGATACAAGTTATTTCATGAGTCGGTATATATGGAATCCAGAAAACGAGGATTTTAATGGTGCTAGTGACTTTGATGATCATGATTTGACAGATACCAGCAGTAGTTCATTTAGCAACCTACAAGATGAAGATGGAGACGAATGTGGTAGTTTGGCTGACTTCTGTACACCAGCCCTTTCTGTGAAGTACTCGTTCAGCAATTTCTCTTTCAAGAATTTATCACAGTTGGCTTCCATCAATTATGATTTGGTGGTGAAGAGCAGCCAAAACTCGCCAGATATAACCAGACCATCCTTTCCTTGA | 3528 | 43.08 | MSEPPPSVFDHDPSPSAAKLRKIPPIPIRRDTKPNAGDFDPDQEHDHAEDHPPQPGDSSIIMASSLGLNHIRTRSAPLPLRTCAVGTPSNLGDDSRNNVADGSESEPKNSSTEQGTNVPWSQPNSLRYPSALNHDIEGHHAAYTKEIQSPRFRAILRVTSGRKKRTPDIKSFSHELNSKGVRPFPVWKPRAFGHLEEIMVAIRAKFDRLKDDVNYELGIFAGDLVDILEKADQSMPELKEGLEDLLVVARKCATMSPTEFWTKGEGIVQNLDDRRQELSLGILKQAHTRLLFILTRCTRLIQFRKESGYEDEHILGLHQLSDLGIYPEKIRQLEQLEFGDPLTGKEDIAKQLKLAGKDQAHRIVKQDSEQTFSNSAGNVSLDSAVSFDSSTSMYRMASWKKLPSAAEKNRKESDPVDTTHAKDKIEVLHVHEAKTGSNDKLDIPSSHIEHSEAPPKEQKVSWGIWGYHQNANFESLMICRICEVEIPTIHVEVHSRICTIADRCDLKGLTVNERLERVARALEKILESWTPKSTPRSSDTSCANFDTVKVSTSNMQEEIFELSSKGISVSCRNSEELLDSLPVTGNSSFVESQDIFQDPSYNRPFIFTPEHSTKSMSAGTLTPRSPLLTPRSSQIELLLHGRRAISELENYQQIYKLLDIVRSIANVNNSGYGALECMLDRLEDLKYAIQDRKVDALVVETFGRRIEKLLQEKYVQLCGQIEDDKVDSSVGIVDEESSVEDDTVRSLRASPVNPCSKDRTSIEDFEIIKPISRGAYGRVFLARKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDIYSLLRNLGCLDEDMARIYIAEIVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKIGLINSTDDFSGPSINGTVPLGDNGPISQSLSKREHRQKHSVVGTPDYLAPEILLGMGHGVTADWWSVGVILFEMLVGLPPFNAESPQLIFDNIINRDIPWPKVPDEMSYEAQDLIDKLLTENSVQRLGATGAREVKQHPFFKDINWETLARQKAMFIPSAEPHDTSYFMSRYIWNPENEDFNGASDFDDHDLTDTSSSSFSNLQDEDGDECGSLADFCTPALSVKYSFSNFSFKNLSQLASINYDLVVKSSQNSPDITRPSFP | 1175 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6025152 | 6036745 | + | CmaCh02G010150.1 | Cma02g01015 | 288766 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g01015 | 1175 | PANTHER | SERINE/THREONINE PROTEIN KINASE IRE-RELATED | 15 | 1174 | - | - | |
Cma02g01015 | 1175 | MobiDBLite | consensus disorder prediction | 88 | 126 | - | - | |
Cma02g01015 | 1175 | Gene3D | Transferase(Phosphotransferase) domain 1 | 849 | 1071 | - | - | |
Cma02g01015 | 1175 | ProSiteProfiles | Protein kinase domain profile. | 765 | 1053 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma02g01015 | 1175 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 15 | 1174 | - | - | |
Cma02g01015 | 1175 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 1054 | 1155 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cma02g01015 | 1175 | Pfam | Protein kinase domain | 765 | 1053 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma02g01015 | 1175 | SUPERFAMILY | Protein kinase-like (PK-like) | 762 | 1087 | IPR011009 | - | |
Cma02g01015 | 1175 | MobiDBLite | consensus disorder prediction | 82 | 126 | - | - | |
Cma02g01015 | 1175 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 884 | 896 | IPR008271 | GO:0004672|GO:0006468 | |
Cma02g01015 | 1175 | MobiDBLite | consensus disorder prediction | 24 | 53 | - | - | |
Cma02g01015 | 1175 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
Cma02g01015 | 1175 | CDD | STKc_MAST_like | 771 | 1058 | - | - | |
Cma02g01015 | 1175 | SMART | serkin_6 | 765 | 1053 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma02g01015 | 1175 | Gene3D | Phosphorylase Kinase; domain 1 | 763 | 1080 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g01015 | Cma15g01387 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01015 | Cma-Chr2:6025152 | Cma08g01079 | Cma-Chr8:6729107 | 2.25E-85 | dispersed | |
Cma01g00745 | Cma-Chr1:3970817 | Cma02g01015 | Cma-Chr2:6025152 | 0 | transposed | |
Cma15g01387 | Cma-Chr15:8686996 | Cma02g01015 | Cma-Chr2:6025152 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68356 | PF00069 | Pkinase | 1.30E-63 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g01015 | - | - | csv:101210442 | 1971.05 |