Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01025 ATGGTGAGAGGGAGGGTGGAAATGAAACGAATAGAAAACGCGACAAATCGTCAAGTGACATTCTCGAAGAGACGAAATGGGCTGTTGAAGAAGGCGTATGAGCTCTCTGTTCTGTGCGATGCTGAAGTTTCTGTCATGATTTTCTCTCAGAAAGGAAGGCTTTATGAGTTTTCAAGCACCGATATACATAAGTCCATCGAGCGTTATAGATGTTATGGAAAAGATGGACAGACCAACGCTCTTCGCTCCGAAGTATACATGCAGCAAATGAAGCAGGAAGCTGACATGACGGCAAAGAAAATGGAGCAACTTGAAACTTCACAAAAGAAGCTGTTGGGACGTGGGTTGGATTCGTGTTCGTTGGAGGAAATCCGAGAGATTGAAACCCAGTTGATACTTAGCTTGACTCGTATTCGAGAAAGAAAGTCTCAGCTATTCAAGGAGCAGAGAATGAAGCTGATTGAAAAGGGGAAACTGCTCATAGAGGAAAATATAAAGTTAGCTGCAAAGTGTGGTACTCAGCCATGGGAGGCAGAAGGTGGTGGTGAAGATGAGGGAGGATGGATTATGAGTTTATTATGCACCCAAAATGGTCAACCTTCTCATATCAACACTAAATTGTTCATTGGATTGCCTTGCTCATGA 645 43.26 MVRGRVEMKRIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVSVMIFSQKGRLYEFSSTDIHKSIERYRCYGKDGQTNALRSEVYMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGWIMSLLCTQNGQPSHINTKLFIGLPCS 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6091642 6095821 - CmaCh02G010250.1 Cma02g01025 288776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01025 214 PANTHER MADS-BOX PROTEIN SOC1 1 211 - -
Cma02g01025 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma02g01025 214 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma02g01025 214 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Cma02g01025 214 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma02g01025 214 Pfam K-box region 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma02g01025 214 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma02g01025 214 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Cma02g01025 214 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Cma02g01025 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma02g01025 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma02g01025 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma02g01025 214 Coils Coil 87 107 - -
Cma02g01025 214 PANTHER MADS BOX PROTEIN 1 211 - -
Cma02g01025 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01025 Cma15g01396 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01025 Cma-Chr2:6091642 Cma15g01186 Cma-Chr15:7507315 3.67E-54 dispersed
Cma15g01396 Cma-Chr15:8798660 Cma02g01025 Cma-Chr2:6091642 1.05E-109 wgd
Cma02g01025 Cma-Chr2:6091642 Cma02g01494 Cma-Chr2:8539914 4.48E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34497 PF01486 K-box 8.20E-18 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01025 - - csv:101212323 317.005