Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01027 ATGTCTTCCGCCACCCTTCTCTCTCTCCCCTTCACTCTCAGGCCCTCTCGCTTCCCCAATTCCTCTCTCTCGCCGCTCCGTCGTGCCACCTCTGTCGCGCCATTTCCCACAGTTGCGGCGGTTCGCTGCGGGTTTAAGCCTGCTTCCAAAAGTAGCAGAAGCAGTTCTACTTCTTTCGCCTATGTCGGGCCTGCTTCGGACCCTAATGTCAGCGAGTCCGACCCGAAAATCGATGACGCCTCCGATTTCCAGGATCGAGTTCCTAGGGTCTTGTATTGGGGGCTCTTGTGGAAGCTTTTGACGAAGCACAAGCTGCGGCTTCTGGTTTCTTCGCTTACTCTTGTTTGCTGCACCACTTGCACTCTTTCCATGCCGTTTTTCTCAGGTAGATTTTTTGAGGTACTTATAGGTGCAAAACCTGGGTCTTTGTGGAGGCTGCTGAGTACAGTTGGAATTTTATATGCATTGGAGCCAATATTGACGGTCTTGTTCGTCACAAACATGAATTTCATGTGGGAGAAGGTTATGTCAAGATTGAGAGCCCAGATTTTTGGAAGGTTGCTGATTCAGAAGGTGGAATTTTTTGACAGATACAAGGTTGGTGAAATTACCGGATTGTTAACTTCTGATTTGGGCTCTCTTAAAGATGTGGTGAGTGAGAATGTTTCAAGGGACCGTGGATTCAGAGCGTTCTCTGAGGTGATTGGAACAATATGTATATTATTTGCATTGTCCCCCCAGCTTGCACCTATTCTTGGTCTTCTGATGTTGAGTGTATCTTTTTCAGTGGCTGTATACAAGCGTTCTACTATCCCTGTATTTAAAGCTCATGGATTAGCTCAAGCCTCCATGGCTGATTGTGCAACAGAGACATTCTCTGCTATTCGCACTGTGAGGTCCTTTGGTGGTGAAAAGCGTCAAATGTTCAATTTTGGTCGCCAGGTTATTGCATATGAGGGTAGTGGCATTTCACTTGGGACTTTTAAATCTCTGAATGAATCCTTAACTAGAGTTGCTGTTTATATTTCGCTTATGTCATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTTTCTGTCGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTGCTGTTCAAGGATTGGTAAATACATTTGGAGATCTCCGTCGAACTTTTGCTGCTGTTGAAAGAATTAATTCTGTTTTACATGAAGAGGTTGATGAAGCCCTTGCATATGGATTAGAAAAAGAGATGCAGCAGAAAGAATTTAAATATAAGTTGTTATTCTCTGGCGTTACTGATGAAAACAGTCAGGTGAAAACACAGTACATGGCAGACCTAAAATCTTCTAGCAACGTTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGGCCTTTTCTTATCCGTTGAGACCTGACGTTGACATTCTTAGTGATTTGAATTTAACACTTAAATGTGGAACCGTGACGGCACTAGTGGGTCCTAGTGGAGCAGGAAAGAGTACAATAGTACAGCTGTTGGCACGTTTTTATGAGCCAAAGCAAGGGCAAATAAAAGTTTCTGGTGAAGATATTCGAGCATTTGATAAGAGGGAATGGGCTCGGGCTGTTTCAATAGTGAATCAAGAACCTGTTCTGTTTTCGGTGTCTGTTGGAGAAAATATTGCATATGGACTTCCAGATGATAATGTAACAAAGGATGAGGTGATAAAGGCAGCCAGAGCTGCAAACGCTCATGACTTCATTGTTGCACTTCCTCAGGGCTATGACACGCCAGTCGGTGAACGTGGAGGCCTTCTAAGTGGTGGCCAGCGGCAGAGAATAGCCATTGCAAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTTGATGAGGCAACCAGCGCACTGGATGCGGTTAGCGAGCGACTCGTCCAGGATGCTCTAAACCTGTTGATGAAGGGAAGGACGACATTGGTGATTGCACATCGGCTGAGTACAGTTCAAAATGCTCATCAAATTGCATTTTGTTCTGATGGAAAAATTGTAGAGCTGGGTACTCATTTGGAACTATTGGCTCAGAAAGGTCAGTATGCTTCATTAGTTGGCACACAAAGGCTGGCATTTGAGTGA 2124 44.3 MSSATLLSLPFTLRPSRFPNSSLSPLRRATSVAPFPTVAAVRCGFKPASKSSRSSSTSFAYVGPASDPNVSESDPKIDDASDFQDRVPRVLYWGLLWKLLTKHKLRLLVSSLTLVCCTTCTLSMPFFSGRFFEVLIGAKPGSLWRLLSTVGILYALEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVVSENVSRDRGFRAFSEVIGTICILFALSPQLAPILGLLMLSVSFSVAVYKRSTIPVFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFNFGRQVIAYEGSGISLGTFKSLNESLTRVAVYISLMSLYWLGGDKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRRTFAAVERINSVLHEEVDEALAYGLEKEMQQKEFKYKLLFSGVTDENSQVKTQYMADLKSSSNVINLAWSGDICLEDVAFSYPLRPDVDILSDLNLTLKCGTVTALVGPSGAGKSTIVQLLARFYEPKQGQIKVSGEDIRAFDKREWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAARAANAHDFIVALPQGYDTPVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNLLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELLAQKGQYASLVGTQRLAFE 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6106745 6114725 + CmaCh02G010270.1 Cma02g01027 288778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01027 707 Pfam ABC transporter 481 632 IPR003439 GO:0005524
Cma02g01027 707 CDD ABC_MTABC3_MDL1_MDL2 463 702 - -
Cma02g01027 707 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 108 391 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma02g01027 707 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 51 705 IPR039421 -
Cma02g01027 707 SMART AAA_5 490 684 IPR003593 -
Cma02g01027 707 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 463 701 IPR003439 GO:0005524
Cma02g01027 707 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 51 705 - -
Cma02g01027 707 Gene3D ABC transporter type 1, transmembrane domain 450 460 IPR036640 GO:0005524|GO:0016021
Cma02g01027 707 Pfam ABC transporter transmembrane region 109 378 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma02g01027 707 Gene3D - 461 704 IPR027417 -
Cma02g01027 707 ProSitePatterns ABC transporters family signature. 604 618 IPR017871 GO:0005524
Cma02g01027 707 CDD ABC_6TM_TAP_ABCB8_10_like 112 399 - -
Cma02g01027 707 Gene3D ABC transporter type 1, transmembrane domain 93 409 IPR036640 GO:0005524|GO:0016021
Cma02g01027 707 SUPERFAMILY ABC transporter transmembrane region 96 408 IPR036640 GO:0005524|GO:0016021
Cma02g01027 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 454 702 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01027 Cma-Chr2:6106745 Cma13g01065 Cma-Chr13:8070943 9.28E-97 dispersed
Cma02g01027 Cma-Chr2:6106745 Cma18g00008 Cma-Chr18:30009 6.73E-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01027 K05657 - csv:101211598 1188.71