Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01040 ATGCTTTTAGATTGCAATCCATATCTTGCGAAATACTCTACTTTTGGTGGCCTTAATTCCCCTCTCCATTTTGCGGCTGCTAAGGGCCACAACGAGATTGTGTCCTTGTTGCTTGAAAATGGAGCTGATGTGAATTCCAGGAATTACTGTGGGCAGACAGCAGTGATGCAAGCTTGTAGATATGGACACTGGGAAGTTGTGCAAACTCTTCTAATTTTCAGATGCAATGTAATGAGAGCAGATTACCTTAGCGGTCGGTCTGCTCTGCATTTTGCTGCTGTAAATGGGCATGTGAGATGTCTAAGACTTATCGTGGCTGACTTTGTTCCGAGTGTTCCCTATGAGGCTATCGATAGCCAGACAGATCCTAGCAAAAGTGATGGTGCGAATGTGAAAAACAGATGTGAACAAGGTGCTTTGTCCAAGTTTATAAATAAGGCCGCTGATGGTGGCATTACTGCTCTTCACATGGCAGCACTAAATGGATATTATGATTGTGTTCATCTTCTTCTCGATCTTCAGGCTAATGTTTCTGCAGTAACATTTCACTACGGGACCTCGATGGATTTGATAGGTGCTGGAAGCACTCCATTGCATTATGCAGCTTGTGGGGGTAACTTGAAGTGCTGTCAGATTCTCCTTGCAAGAGGTGCTTCTCGGACGACTTTGAATTGCAATGGGTGGCTTCCTTTAGATGTTGCCAGAATGTGGGGACGCCACTGGCTCGAACCTGTGGTAGCTCCCAATTCGGTCTCTATAATACCGAGATTCCCCACTTCCAACTACCTGTCCTTGCCTCTACTGAGTGCATTAAACATTGCCAGGGAATGCGGTTTTAAGTCTATGGGAGCGACCTCCGACGAAGGGGATACTTGTGCTGTCTGTTTAGAGAGAGTATGTTCTGTGGCAGCAGAAGGATGTGGACATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGTTCGACTAGCAATATCCAATCACAAACAATCGGTTTATCAGGCTCGATTCCATGCCCCCTTTGCAGACATGCAATTATATCTTTCGTAAAGTTGTCTCGTGCCACAGCAAAGGAAAAACAGCTTCATCTATCTCTTAGCATATGCAATCCATGCATTCTTCACACCTGTGATGCTGAAGATCAGGCTTCTACTTGTACGCCAGAGATCCGAAAGAATCGTGTAGCATCGGTTTCTTCAGATGTATTTTGCCCAGTAACTTGTAGCCCATTCCCTTCTGCTGCCATTCCTCTATGTACATGCAATGACGGTCCATGCCCAACCTTCGAGCCCCGAGACGTTGGAACAGAAGATGAATCGCCCCGTCACTTGCAAACTACCCCAATAGACCAGGACAAATTGGGAGATCCAAGACAAGAAAGAACTAGCTGTTCAAGCATGTTTTGGGGCAGAAGAAGCGGTAGCAGGGAGAATCAATGCAATTCAGAGATAAACGCTTGA 1458 45.61 MLLDCNPYLAKYSTFGGLNSPLHFAAAKGHNEIVSLLLENGADVNSRNYCGQTAVMQACRYGHWEVVQTLLIFRCNVMRADYLSGRSALHFAAVNGHVRCLRLIVADFVPSVPYEAIDSQTDPSKSDGANVKNRCEQGALSKFINKAADGGITALHMAALNGYYDCVHLLLDLQANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRTTLNCNGWLPLDVARMWGRHWLEPVVAPNSVSIIPRFPTSNYLSLPLLSALNIARECGFKSMGATSDEGDTCAVCLERVCSVAAEGCGHELCVRCALYLCSTSNIQSQTIGLSGSIPCPLCRHAIISFVKLSRATAKEKQLHLSLSICNPCILHTCDAEDQASTCTPEIRKNRVASVSSDVFCPVTCSPFPSAAIPLCTCNDGPCPTFEPRDVGTEDESPRHLQTTPIDQDKLGDPRQERTSCSSMFWGRRSGSRENQCNSEINA 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6191825 6196144 - CmaCh02G010400.1 Cma02g01040 288791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01040 485 Pfam Ankyrin repeat 151 181 IPR002110 GO:0005515
Cma02g01040 485 ProSiteProfiles Ankyrin repeat profile. 193 225 IPR002110 GO:0005515
Cma02g01040 485 MobiDBLite consensus disorder prediction 431 445 - -
Cma02g01040 485 ProSiteProfiles Ankyrin repeat region circular profile. 150 179 - -
Cma02g01040 485 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 485 - -
Cma02g01040 485 MobiDBLite consensus disorder prediction 431 485 - -
Cma02g01040 485 Pfam Ankyrin repeats (3 copies) 22 105 IPR002110 GO:0005515
Cma02g01040 485 PANTHER HOMEOBOX PROTEIN WARIAI 1 485 - -
Cma02g01040 485 SUPERFAMILY RING/U-box 287 347 - -
Cma02g01040 485 ProSiteProfiles Ankyrin repeat region circular profile. 17 48 - -
Cma02g01040 485 ProSiteProfiles Ankyrin repeat profile. 150 182 IPR002110 GO:0005515
Cma02g01040 485 ProSiteProfiles Ankyrin repeat region circular profile. 84 105 - -
Cma02g01040 485 Pfam Ankyrin repeats (many copies) 193 234 IPR002110 GO:0005515
Cma02g01040 485 ProSiteProfiles Zinc finger RING-type profile. 292 342 IPR001841 -
Cma02g01040 485 SMART ring_2 292 341 IPR001841 -
Cma02g01040 485 ProSitePatterns Zinc finger RING-type signature. 307 316 IPR017907 -
Cma02g01040 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 351 IPR013083 -
Cma02g01040 485 ProSiteProfiles Ankyrin repeat profile. 84 105 IPR002110 GO:0005515
Cma02g01040 485 SUPERFAMILY Ankyrin repeat 19 240 IPR036770 -
Cma02g01040 485 SMART ANK_2a 193 225 IPR002110 GO:0005515
Cma02g01040 485 SMART ANK_2a 50 79 IPR002110 GO:0005515
Cma02g01040 485 SMART ANK_2a 17 46 IPR002110 GO:0005515
Cma02g01040 485 SMART ANK_2a 84 114 IPR002110 GO:0005515
Cma02g01040 485 SMART ANK_2a 150 179 IPR002110 GO:0005515
Cma02g01040 485 Gene3D - 122 242 IPR036770 -
Cma02g01040 485 ProSiteProfiles Ankyrin repeat region circular profile. 193 219 - -
Cma02g01040 485 Gene3D - 1 107 IPR036770 -
Cma02g01040 485 ProSiteProfiles Ankyrin repeat profile. 17 49 IPR002110 GO:0005515
Cma02g01040 485 MobiDBLite consensus disorder prediction 459 485 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01040 K19044 XBAT32_33; E3 ubiquitin-protein ligase XBAT32/33 [EC:2.3.2.27] - zju:107414468 833.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01040 Cma-Chr2:6191825 Cma12g00996 Cma-Chr12:7960186 7.80E-140 dispersed
Cma15g01406 Cma-Chr15:8874487 Cma02g01040 Cma-Chr2:6191825 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g617 Blo06g01115 . . . . . . . . . Cma02g01040 . Car02g00785 . . Cpe05g00681 . . . . . . . . Cla01g00540 Cam01g0564 Cec01g0554 Cco01g0579 Clacu01g0560 Cmu01g0532 Cre09g1977 . . . . . Csa05g00574 Chy09g00931 . . . . Bda15g00735 . Bpe12g00419 Bma08g00340 . . Cmo02g01055 . . . . . . Cpe13g00045 . . . . . . . . . . . . . . Lsi09g00584 . . Cme09g01458
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006256 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01040 Cma_Chr02 FPKM 12.574759 14.520274 14.522823 15.578813 14.869198 16.649464 16.231922 26.78577 24.922239 23.990715