Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01044 ATGTCCATGATGATTAGTGAAAGACTGGCTCTAGAGGGCTACTTGGACGCTGTCCAACAAGGGCTGGTGCCCCCAATGACATCTTCTAGGGTGGCTGGAGGATTAGCCCAATCATCCTCAAACTCTGGGATTTTTTTCCAAGGAGATGGGCAGTCAAAGGGCAATGTTAAATCTCACTTGGTCTCATCTTATGGAAACTCATCAAATTCAATTCCAGGACCTGGCCACTCAAATTTGGGTCCAGTTTCTGGGGACACGAATAATGTAGTGTTAAATAGTGTGGCAAACTCAGGAATAAGTGTTGGGGCAAGTTCGTTGGTTACAGATGCAAACTCTGCACTCTCAGGTAGGCCTCATTTGCAGAGAAGTCCAAGCATGAATGCAGAATCATACATGCGATTACCTACATCACCTATGTCTTTTACATCAAATAACATGAGTCTCTCGGGTGCATCACTCATTGATGCATCTTCTACAGTACAGCACAATTCTCAGCAGGATCATAACGCCCCACAATTGTTGCAGACCCAACCGCAGTCCCAACAAGTTGCTCCAGGTGATGCATCATTGTCAAATTCACAAATCGTCCAAGCTTCTCTACCCGTGGGTGCACGTGTTGCTGGATCTCTCATGACAGATCCCAACAGTTATTCTCAGTCACAGAAGAAACCGCGCTTGGATATTAAGCAGGATGATTTCCTGCAACAGCAGATGCTACAACAACTCCTGCAGAGACAAGATTCCATGCAGCTGCAAGGTCGTAATACGCCGCATTTACAAGCAGCATTATTTCAGCAGCAACAGAGGTTACAGCAACAGCAACAGATTTTTCAGTCTTTGCCTCCTTTGCAGAGAGCTCACCTGCAGCAGCAGCAGCAGATACAGTTGAGACAGCAGCTTCAACAACAGGCAATACAACCCATAAATGCTATGAAGCGGACTAATGATGGTGGTGTATGTGCTCGGCGGCTAATGCAGTACCTATACCATCAGCGTCAAAGGCCTGCTGATAATAGTATTGCCTATTGGAGGAAGTTCATGACAGAATATTATTCCCCTCGTGCAAAGAAAAGATGGTGTTTGTCATTATATGACAATGTTGGTCATCATGCACTAGGCGTTTTCCCTCAAGCGGCTATGGATGCATGGCAGTGTGAAATTTGTGGTTCAAAATCTGGGCTGGGATTTGAGGCTTCCTTTGAAGTGCTTCCTAGACTTAATGAGATCAAATTTGGCAGTGGAGTCATTGATGAGCTATTGTTCTTGGATATGCCACGGGAGTTCAGATATTCGTCTGGAATTATGATGTTAGAATATGGAAAAGCAGTTCAAGAGAGTGTGTACGAGCAACTTCGTGTTATTCGCGAGGGTCACCTTCGTATCATATTTACTCATGAATTGAAGATATTGGCATGGGAATTTTGTGCAAGACGTCATGAAGAACTTCTACCTCGTCGGTTGGTTGCACCTCAGGTGAATCAGTTGGTCCAGGTGGCACAGAAATGCCAGAGCACTATTGCTGAAGGAGGATCTGATGGGGCTTCTCAGCAGGATTTACAAGCAAATAGTAATATGGTTTTGACAGCTGGGCAGCAGCTCGCTAAGAGTCTGGAGTTGCAGTCACTTAATGATTTGGGGTTCTCCAAAAGATACGTTAGATGCTTGCAGATATCAGAGGTCGTCAACAGCATGAAAGATCTGATTGATTTCTGTAGGGTGCAGAAAACCGGACCAGTTGAGGGTCTGAAAAGTTATCCTCAGCACGCCACAGCCAAGCTGCGGATGCAAAAAAGGCAAGAGATTCAACAGGTCGCTACTGCTCAAGGTCTGCTAACCGACCGCAATAGGATGGTCGCCCTGCATCCAGGGCTGATGAACAACCAAATGAATAGCCAAAATCAAGTAACCGGCAGAGGAGCTTTGAGCAGTTCGGCCCAAGCCGCTTTGGCATTGTCTAACTACCAGAATCTGCTTATGAGACAGAATTCAATGAATTCAAACAGTTCAAACCCGCTTCAGCAGGGGACATCATCATCCTTCAATAACTCAAACCAGAACCAGAGTCCTTCATCAAGCTCTCATGGTGGGACAACTGCTTTGACATCAGGACCGATGCGGAACGTGCTCGGCAGTGCTCTTTCAAGTCCTCATTTACCTTCACAACAATCCAACAACTTAGTTGCGCAAAACCATCCTCAGAGCGCTCAAGGTAGCGGCAACAATAATCCGGCCATGCAACATCAGATGATCCAGCAACTTCTCCAGATATCTAATAACAACAGTGGGGGAGGGCAACAGCAGCCACTTCCTGGTTCAAACACGAACATGAACGGAAAGATGGGGGGGTCTTATTCAGGGTTCGGCGGCAGTTCTTCAGCAGCTTCTGGCACGGCCAATGCATCCATCAGTAATATGCCGCCTGCCCCGAGCCGGAGTAATAGCTTCAAAAGCGCTTCAAATGGAGATGTATCAGCAGCTGGAGGTCATAGCAGTGGGTTCAACCAAAAAAGTGGAGACTTGCCGCAAAATCTTCATTTAGAAGAGGACATAATCCAGGATATAGCCCATGATTTTACAGAAAATGGGTTTTTTAACGGTGATCTTGACGATAATATGTGCTTCGCCTGGAAAGTTCAACTAACTTAA 2646 45.99 MSMMISERLALEGYLDAVQQGLVPPMTSSRVAGGLAQSSSNSGIFFQGDGQSKGNVKSHLVSSYGNSSNSIPGPGHSNLGPVSGDTNNVVLNSVANSGISVGASSLVTDANSALSGRPHLQRSPSMNAESYMRLPTSPMSFTSNNMSLSGASLIDASSTVQHNSQQDHNAPQLLQTQPQSQQVAPGDASLSNSQIVQASLPVGARVAGSLMTDPNSYSQSQKKPRLDIKQDDFLQQQMLQQLLQRQDSMQLQGRNTPHLQAALFQQQQRLQQQQQIFQSLPPLQRAHLQQQQQIQLRQQLQQQAIQPINAMKRTNDGGVCARRLMQYLYHQRQRPADNSIAYWRKFMTEYYSPRAKKRWCLSLYDNVGHHALGVFPQAAMDAWQCEICGSKSGLGFEASFEVLPRLNEIKFGSGVIDELLFLDMPREFRYSSGIMMLEYGKAVQESVYEQLRVIREGHLRIIFTHELKILAWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAEGGSDGASQQDLQANSNMVLTAGQQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCRVQKTGPVEGLKSYPQHATAKLRMQKRQEIQQVATAQGLLTDRNRMVALHPGLMNNQMNSQNQVTGRGALSSSAQAALALSNYQNLLMRQNSMNSNSSNPLQQGTSSSFNNSNQNQSPSSSSHGGTTALTSGPMRNVLGSALSSPHLPSQQSNNLVAQNHPQSAQGSGNNNPAMQHQMIQQLLQISNNNSGGGQQQPLPGSNTNMNGKMGGSYSGFGGSSSAASGTANASISNMPPAPSRSNSFKSASNGDVSAAGGHSSGFNQKSGDLPQNLHLEEDIIQDIAHDFTENGFFNGDLDDNMCFAWKVQLT 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6218305 6222766 - CmaCh02G010440.1 Cma02g01044 288795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01044 881 MobiDBLite consensus disorder prediction 56 84 - -
Cma02g01044 881 MobiDBLite consensus disorder prediction 758 840 - -
Cma02g01044 881 Pfam LIM-domain binding protein 323 583 IPR029005 -
Cma02g01044 881 PANTHER LIM DOMAIN-BINDING PROTEIN 191 877 IPR029005 -
Cma02g01044 881 PANTHER LIM DOMAIN-BINDING PROTEIN 30 179 IPR029005 -
Cma02g01044 881 MobiDBLite consensus disorder prediction 662 743 - -
Cma02g01044 881 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 191 877 - -
Cma02g01044 881 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 30 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01044 Cma-Chr2:6218305 Cma16g00145 Cma-Chr16:635891 0 dispersed
Cma15g01411 Cma-Chr15:8900528 Cma02g01044 Cma-Chr2:6218305 0 wgd
Cma18g01227 Cma-Chr18:9659453 Cma02g01044 Cma-Chr2:6218305 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01044 - - bhj:120092747 1231.47