Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01047 ATGGATTTTCCCGATGCTTCTTCTTCTTCTAATTCCGAATTCTTCACTTCCCGCCGATCAAATTTCTCCGACGAGGAGCTTCTCCTGGCATCCCGACACCCCAAGAAGAGGGCCGGAAGAAAGAAATTCAAGGAAACTCGCCACCCTGTTTACCGTGGTGTCCGCCGCCGCAATTCCGGCAAGTGGGTCTGCGAGGTTAGAGAGCCCAATAAAAAGACTAGAATTTGGCTCGGTACATTCCCCACCGCCGAGATGGCTGCTCGGGCTCATGATGTAGCCGCCATCGCCCTCCGCGGTCGCTCTGCTTGTCTTAATTTTGCCGACTCTGTTTCCGCGCTTCCTCGCCCGGCCTCTCTTGATCCCAAGGATATTCAGAGGGCCGCGGCTGAGGCTGCAGAGGCCTTCCGCCCGCCGGAGACTGCACCGGCGGAGGATATGTTTTGTTTCGATAACGATGCGATGCCCGGGTTTCTGGCGGACATGGCGGAGGCAATGCTGCTGCCGCCGCCCAATTGTGTGGCGACTGACCACGACGACTATGGGCCGAATTCCATGGATTTTGATGCCGACATGTCGTTGTGGAGTTACTCAATTTGA 597 56.11 MDFPDASSSSNSEFFTSRRSNFSDEELLLASRHPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSVSALPRPASLDPKDIQRAAAEAAEAFRPPETAPAEDMFCFDNDAMPGFLADMAEAMLLPPPNCVATDHDDYGPNSMDFDADMSLWSYSI 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6235241 6235837 + CmaCh02G010470.1 Cma02g01047 288798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01047 198 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Cma02g01047 198 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Cma02g01047 198 MobiDBLite consensus disorder prediction 26 47 - -
Cma02g01047 198 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 9 198 IPR045277 GO:0003700
Cma02g01047 198 SUPERFAMILY DNA-binding domain 50 109 IPR016177 GO:0003677
Cma02g01047 198 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Cma02g01047 198 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Cma02g01047 198 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Cma02g01047 198 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Cma02g01047 198 CDD AP2 51 109 IPR001471 GO:0003700|GO:0006355
Cma02g01047 198 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 9 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01047 Cma-Chr2:6235241 Cma16g00151 Cma-Chr16:665860 3.37E-76 dispersed
Cma02g01047 Cma-Chr2:6235241 Cma02g01486 Cma-Chr2:8494391 5.76E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34498 PF00847 AP2 9.00E-16 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01047 - - csv:101207745 283.108