Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01050 ATGAAGCTCCTCCCCTTCCTTCCATGGCCGAACCTCCTCCTCCTCCTCCACATGGCCTTCCTCGCCCTCCTCTTCTCATTTTCTTCTCCCCTGTTTCATTCTTCCATGGCTTCTTCACATCCTCAGGATGAAGGACGAGCTCTAATGTCAATCAAAGCCTCGTTTAGCAATGTAGCTAATGTGTTGCTCGATTGGGATGATGATCATAACAACGATTTCTGTTCATGGCGTGGGGTTTTCTGCGACAATCTTAGTCTTTCGGTTGCTGCTCTGAACTTGTCCAACTTGAATCTGGGTGGGGAGATTTCACCAGCCATCGGAGATTTAAGAAACTTACAGTCAATTGATTTTCAAGGAAACAAACTGACTGGACAAATCCCTGATGAGATTGGTAACTGTGGTCTTCTCGTTCATTTGGATTTATCTGATAATTTGCTCTATGGGGACGTCCCCTTCACTGTTTCCAAGCTGAAGCTGCTTGAGTTCTTAAATCTGAAGAACAATCAGTTGACTGGCCCCATCCCTTCTACTCTTACTCAGATTCCTAATCTGAAAACTCTTGATCTTGCACGAAACCAGCTTACTGGAGAGATTCCTAGGCTAATCTATTGGAATGAAGTACTGCAATATCTCGGGTTACGAGGGAACTTCTTGACGGGGTCGCTGTCCTCCGATATGTGTCAGCTGACTGGCTTGTGGTACTTTGATGTAAGGGGGAACAATTTGACTGGAACTATACCTGATAGCATAGGGAACTGTACAAGTTTTGAAATTCTGGATATATCCTACAACCAGATCTCAGGGGAGATTCCTTACAACATTGGATTTCTTCAAGTAGCTACTTTATCATTACAGGGAAACAGGTTGACTGGTAAGATTCCCAATGTCATTGGATTGATGCAGGCCCTTGCTGTCCTGGATTTGAGTGAGAATGAGCTTGAAGGGCCAATTCCCCCAATATTTGGCAACCTATCCTACACAGGGAAATTATACCTACACGGAAACAAGTTGACCGGGCCGATACCCCCTGAGCTCGGCAATATGTCAAAGCTTAGCTACCTGCAACTAAATGATAATCAACTAACAGGAACAATTCCATTTGAACTTGGAAAATTGGATCAGTTGTTTGAATTGAATCTAGCTAACAATTACCTTGAAGGACCCATTCCTCACAACATCAGTTCTTGCACTGCACTGAATCAATTTAATGTTCATGGAAACCGTCTCAACGGATCGATCCCTCTCGGCTTCCAAGAACTGGAGAGCTTAACCTATTTGAATCTCTCAGCTAATAACTTCAAAGGCAGGATTCCAGTTGAGCTGGGACGCATAGTTAACCTTGATACATTGGATCTATCTCGAAACTACTTCTCGGGTCCAGTTCCTGCGTCTGTTGGTGATTTGGAACACCTTCTTATCCTCAATTTGAGTGCCAATCGACTCGTCGGGCCATTACCTGCAGAGTTTGGGAATCTTCGAAGTGTTCAAACTATTGATATGTCATTCAACAACTTCTCTGGTAGCATTCCCATGGAGTTGGGTCAGCTGCAAAACATTGTCTCCCTAATTTTGAACAACAATCATTTGCAAGGGAAGATACCTGATCAGCTGACAAATTGTTTTAGTCTTACCAATTTGAACTTGTCATACAATAATCTATCTGGTATTTTACCTCCCATGAAGAACTTCTCTCGATTCCAACCTGATAGCTTTATTGGGAATCCTCTGCTGTGTGGAAACTGGCTGGGATTGATCTGTGGACCTTATATGGGAAAACCTCCAGTAATGTTGTCTCGGACAGCGGTTGTTTGTATGACGTTTGGATTCGTTATATTGTTGTCGGTAGTTATAATTGCCGTGTGTAAGTCGAATCCGTCGAAGCAATTGATGAAAGGTTCTAGCAAGACTGGGCAAGGTCCTCCAATTGTGGTACTTCATATGGATATGGCTATTCACACGTTCGACGACATTATGAGAATGACCGAGAATCTAAGCGAGAAATACATTATTGGCTATGGAGCTTCGAGCACTGTGTACAAATGTTCACTGAAGAATTCCCGACCTATTGCAATTAAGCGACTTTACAATCACTACGCTCACAATTTACGGGAGTTTGAGACCGAACTTGAAACCATTGGTAGTATCAGACATAGAAATCTTGTTGTACTTCATGGTTATTCATTATCTCCCTGTGGGAATCTCCTTTTCTATGACTACATGGAAAATGGTTCACTTTGGGATCTGCTTCATGGGCCAGGTAAGAAGGTTAAACTGGATTGGGAAGCACGGTTGAAGATAGCCGTAGGAGCTGCACAAGGGCTTGCATATCTTCACCACGACTGCAACCCACGAATCATTCACCGGGACGTCAAGTCTTCTAATATTCTACTGGATGAAAACTTTGAGGCTCATCTTTCTGATTTTGGGATTGCCAAATGTATCCCAACTGCCAAAACACATGCCTCGACGTATGTGCTTGGAACAATTGGCTATATTGATCCGGAGTATGCTCGGACCTCTCGGCTGAACGAGAAATCCGATGTTTATAGCTTTGGCATTGTTCTTCTGGAACTACTGACTGGAAAGAAAGCTGTGGATAATGAGTCAAATTTGCATCAACTGATATTGTCAAAGACTGATAACAATACTGTGATGGAAGCTGTTGATCCTGAAGTTTCAGTCACCTGTATGGATTCAGCTCATGTCCGGAAAACGTTCCAGCTTGCTCTCCTCTGCACAAAACACAATCAAGCTGAACGACCAACAATGCACGAAGTTGCACGAGTTTTGATCTCCCTCCAGCAACCACCTGCATTGAAACAAACTCCATTCCCTACCAAAACATTGGATTACGCCCAATTTGTGATCGACAAGGGTCAGAATCAAAATGCAAAAGGACAGGAGGAGGAGCAGCAGAAATCCGACGTGGATTCATCCGATGCTCGGTGGTTTGTTCGGTTTGGGGAAGTTATATCAGAACAACACAGTTTGAATCAATAG 3000 43.4 MKLLPFLPWPNLLLLLHMAFLALLFSFSSPLFHSSMASSHPQDEGRALMSIKASFSNVANVLLDWDDDHNNDFCSWRGVFCDNLSLSVAALNLSNLNLGGEISPAIGDLRNLQSIDFQGNKLTGQIPDEIGNCGLLVHLDLSDNLLYGDVPFTVSKLKLLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNFLTGSLSSDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPNVIGLMQALAVLDLSENELEGPIPPIFGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLNDNQLTGTIPFELGKLDQLFELNLANNYLEGPIPHNISSCTALNQFNVHGNRLNGSIPLGFQELESLTYLNLSANNFKGRIPVELGRIVNLDTLDLSRNYFSGPVPASVGDLEHLLILNLSANRLVGPLPAEFGNLRSVQTIDMSFNNFSGSIPMELGQLQNIVSLILNNNHLQGKIPDQLTNCFSLTNLNLSYNNLSGILPPMKNFSRFQPDSFIGNPLLCGNWLGLICGPYMGKPPVMLSRTAVVCMTFGFVILLSVVIIAVCKSNPSKQLMKGSSKTGQGPPIVVLHMDMAIHTFDDIMRMTENLSEKYIIGYGASSTVYKCSLKNSRPIAIKRLYNHYAHNLREFETELETIGSIRHRNLVVLHGYSLSPCGNLLFYDYMENGSLWDLLHGPGKKVKLDWEARLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILLDENFEAHLSDFGIAKCIPTAKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNESNLHQLILSKTDNNTVMEAVDPEVSVTCMDSAHVRKTFQLALLCTKHNQAERPTMHEVARVLISLQQPPALKQTPFPTKTLDYAQFVIDKGQNQNAKGQEEEQQKSDVDSSDARWFVRFGEVISEQHSLNQ 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6257958 6264303 - CmaCh02G010500.1 Cma02g01050 288801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01050 999 Pfam Leucine Rich Repeat 183 201 IPR001611 GO:0005515
Cma02g01050 999 SUPERFAMILY L domain-like 41 325 - -
Cma02g01050 999 MobiDBLite consensus disorder prediction 960 980 - -
Cma02g01050 999 Gene3D Transferase(Phosphotransferase) domain 1 740 943 - -
Cma02g01050 999 SUPERFAMILY Protein kinase-like (PK-like) 641 931 IPR011009 -
Cma02g01050 999 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 37 972 - -
Cma02g01050 999 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 37 972 - -
Cma02g01050 999 SMART LRR_typ_2 468 491 IPR003591 -
Cma02g01050 999 SMART LRR_typ_2 348 372 IPR003591 -
Cma02g01050 999 SMART LRR_typ_2 420 444 IPR003591 -
Cma02g01050 999 SMART LRR_typ_2 181 205 IPR003591 -
Cma02g01050 999 SMART LRR_typ_2 516 540 IPR003591 -
Cma02g01050 999 SMART LRR_typ_2 157 180 IPR003591 -
Cma02g01050 999 SMART LRR_typ_2 229 253 IPR003591 -
Cma02g01050 999 SMART LRR_typ_2 109 133 IPR003591 -
Cma02g01050 999 Pfam Protein kinase domain 667 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01050 999 ProSitePatterns Protein kinases ATP-binding region signature. 670 692 IPR017441 GO:0005524
Cma02g01050 999 Gene3D Ribonuclease Inhibitor 41 204 IPR032675 -
Cma02g01050 999 Gene3D Ribonuclease Inhibitor 205 315 IPR032675 -
Cma02g01050 999 Gene3D Phosphorylase Kinase; domain 1 628 739 - -
Cma02g01050 999 Gene3D Ribonuclease Inhibitor 316 588 IPR032675 -
Cma02g01050 999 ProSiteProfiles Leucine-rich repeat profile. 183 205 IPR001611 GO:0005515
Cma02g01050 999 SMART serkin_6 664 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01050 999 ProSiteProfiles Protein kinase domain profile. 664 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01050 999 Pfam Leucine rich repeat 446 505 IPR001611 GO:0005515
Cma02g01050 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Cma02g01050 999 Pfam Leucine rich repeat N-terminal domain 42 82 IPR013210 -
Cma02g01050 999 SUPERFAMILY L domain-like 321 579 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01050 Cma-Chr2:6257958 Cma19g00324 Cma-Chr19:3070943 0 dispersed
Cma02g01050 Cma-Chr2:6257958 Cma01g01701 Cma-Chr1:11576522 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68358 PF00069 Pkinase 4.20E-41 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01050 K20718 - csv:101213139 1747.25