Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01071 ATGCTTAAAGATCCGAGGAGGCTTTATGCACCTGGTCGACTCTATCACATCGTCGAGCGAAAGCCCTTAAGATGCGGAAGGTTTCCACCTGTGGTGAAGACGGCTGTTCCAGTAGATGGGCGGTTTGAACACATAGTTCTTTCTTGTAATGCAACTTCTGACCATGCCATCATTTGGATAGAGAAAGAAGCCAAACAAGCCCTGGAATTAATGCATAAGGATGATAAAGCCCTGCAGATACCACCCCAACAAAAGATGGAGAGGCAAGAGACTTTAGCTAGAGAGCATAGCGAAGAGTATAAGGCTGCATTGCAACGTGCCGTGACGTTAGCAGTGCCACATGCCTACGCGCTTGCCCCATATGGGACCTTCGGCCAGACAGATGATGGGGAAGAAGAAGAAGAGTCACCAGGATCAAGTGGTGGAGGGTCATCGAGGAGGAAGAAAGAAACTTGGAATGAACTGATTGAACGTCTTTACGACAAGGATGATTCAAGAAGCGCAGTGCTGAAGAAATCAGTTTTAGTTTCATATTTTTCAGTGACTGTCATGAAGAAATCAAAGCTTGTTTCTCGTCTCCGAAAATTACGTTCATCTTCTGATGGTGGGGTACACATTAGGAGCCGTCCAATAGGCGTAGACGTGCGGGAGGAGTACGCAAACGCCTTCCGCACGGAATCATATCTAGATTTCTGGACACGTGTCGTGGCCTTAAAAGACGTAGCAGTGGAGTCCACAACAGCAAGCCGGCTGTCGTCTTACCGGCTATTCGCCGAACATCTACTGGACCCAAATGAGCCCACTGTCAAAAGAATCCTAAATTGGGCCCATCTACGGCCCAACTCCAAATCCCTTCTCTCAGACTATTTCTCCCACACAGCCAATGCCTCTCTATTATGTAGCCGTTTACTCAAAGACATAAACCATTTACGTCCAGAAATTGCCATCCAGTCCTTACAAAACCCAGAATTTAATTTCAAACCCCTCTCCATCCACAACCCATTTCCAGAAATAATCCAAAACGGATGCGCCAAATTGCTGAAACAGCTGGAGTTCAACCGCGACAAGGCTCGAACCAAGGTCAAGAGGGTTAGATATTTCCAGCACGGTTCAGCTGGGTTGTTAGTGGCTGTGACCGCGTCGCTTACTGTAATACTCGTGACTCATGGAATTGGTTTAGTGGTTGTTGCTGCTGCACCGTGTCTCGCTGGCCTTGTGGGTGCTGTGAAGTTAGCCAGGGTTAAGGAGGTGGCTCGAGTGCTGGATGTGGCTGCCAAAGCGACCTACACTTTGAATAGGGATTTCGACACGGTTGGTCGGCTGGTGGCTCGGTTGAATCAGGAGGTGGAGCACATGAGGGGGCTGATGAGGTTCTGGGTTGAGCGAGGGGAAGGTCGTGATGGACGGCATGGCGGCGTTGGGGAAGTAGCGCGCCAGTTGCAGCAATGCCGTCTCAATTTGGGGCAACACTTGGATGAACTTGAGGAGCTTTTTAAAAGAAGTATGCCTCCATGGTGGGGGAAGTCATCATCAAAAGAAGCAAAGAAGAGCAAGGAAAGTTTTATCAATACATTGCAGAGAAAACTTAGAACAGCTGATGGTAAAACAAACAGCAGATCAGGAGGATCTCCAAGAACTTGTAATGATAATGATACAATTTCTGAGCAAGGAACTCGATCTCCTATTCTTTTGAGAACAATTTCACCTTCAAAACAAGTATCAAGATGTCAAAGCTTTTCTTCTGAAAGGCCACAAGCTCAACCTCTACCTCTTCCTGGTGTGCAGCCGTCGATTGTAGGTCGTACCGACTCTGGGATTAGTATTTCGCCAAAACCGAGTTCTGAAAGAAGCTCCAAGCCATCGTCATATCTACCACTCCCAAGACCAGCATGCATACCCAGGAGGCCTAACCATGCTGATTTAGATGCAGAGCTTGGTGTTGGTTCAGTGTCCAGTGAGAGCTCGAATGATAGCGCGGATCTACTAGATTCGCGCCATCGTAGTCCTCAGGCAACTGACTACGATCTCGGGTCTAAAACGGCTGCAGGCAGTCCTTCAAGTGCCATTGTCAAGGATCAGTCTTCTATTGTCACTCCACCAAGTTCACGAGAGCCCAGAAAACCAGCAAATATCTCCTTGAGCAACCACATTTTCTCCACATCACCCAAAAGGAGGCCTTTAAGCAGTCATGTTCCAAATCTGCAAGTCCCATATAATGGGAATTTTTGTATTGCTCCAGACAGTTCAATGTCAAGTCCTTCAAGAAGTCCCATAAGGGCTTTTAGCACAGAGCAAGTTATTAACAATGCTGTTAGTGCTGGAAAGTTCTATATGGATCTCACTTTTCCTGGGTCAGGCCATTGTTCTAGTCCTGGTTCTGGTTACAATTCAGGGCATAACTCAATGGGTGGTGATTTATCAGGACAGCTATTTTTGCAACAAAGCCGAGGTAGCCCGGAGTATTCACCAGCTCCCAGTCCCAGAATGACTAGCCCTGGTCCTAGCTCCAGAGTCCATAGTGGTGCAGTGACACCAATTCATCCTAGAGCAGGAGGGATACCAACCGAGTCACAGACATGGCCTGACGAGAAGCAAACACACCGCTTACCTCTACCTCCGGTCGCAATTTCCAATGCTCCTTTTTCTCATTCCAATTCAGCTGCAACATCTCCCTCTGTTCCAAGAAGTCCTGGAAGAGCTGATAATCCAGCAAGCCCAGGCTCCCGTTGGAAAAAGGGGAAGCTTTTGGGCAGGGGTACCTTTGGGCATGTGTATGTTGGTTTCAACAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTTACATTATTTTCAGATGATGCAAAGTCCAAGGAGAGTGGCAAGCAATTAATGCAAGAAATCACCTTGTTGAGTCGTTTACGACATCCAAACATCGTGCAGTATTATGGATCTGAAACGGTTGAGGACAGGCTTTACATTTACCTTGAATATGTATCTGGTGGCTCTATTTACAAGCTTCTCCAGGAATATGGACAGCTTGGAGAAGTTGCACTTCGTAGTTATACCCAGCAAATACTGTCCGGGCTTGCGTATTTACATGCTAAGAGTACTGTTCATAGGGATATCAAAGGAGCAAATATACTCGTTGATCCCACGGGGCGTGTTAAGTTGGCTGACTTTGGGATGGCAAAACATATAACTGGGCAATCGTGCCCTTTGTCGCTTAAAGGCAGCCCATACTGGATGGCACCGGAGGTTATAAAGAATTCAAATGGTTGTAATCTTGCTGTGGATATTTGGAGTCTTGGATGCACTGTTTTGGAGATGGCTACAACGAAGCCTCCTTGGAGTCAATATGAGGGAATTGGCAATGGCAAAGAACTTCCCGAAATCCCAGAGCATCTTTCGCACGATGGAAAAGATTTCGTTAGACAATGTCTGCAACGTAATCCAGCTCATCGTCCTACAGCTGCTCAACTTTTGGAACATCCTTTTGTAAAACATGCTTCACCTCTTGAAAGACCGATTTCGGGTTCTGAGCATTCAGGAAGGAATCCCAGCTTCTTGGATTCTGATAGATCTGCAGCTCCTTCATCTAGACTCTCCACAGCCGTGTTGCATTCCAGTGAAATTCATATTCCGAGGAACCTTTCATGTCCTGTTTCCCCCATTGGAAGCCCTCTGGTGCACTCTCGATCGCCACAGCACCCGAGTGGAAGAATGTCTCCGTCGCCCATCTCTAGCCCTCGGAACATGTCAGGTGCATCGACTCCGCTCACGGGAGGAAGCGGTGCTATTCCACACCAGCATCTCAAACAATCACCGTACCTACAGGAGGGTTTTGGGAGCTTGCCGAAGCCTTCAATAGGTCCCTATAGTAATGGTCCTTCATATCAGGATTCGAACCCTGACATCTTTCAGGGGATGGGGATTCAACCAGGTTCTCACATCTTCTCCGAGCAATTTGGAAAGCCTGCTTGGGAATTATACGACGGGCAGGCAGTCTTGGCCGATCGTGTTTCTAGGCAGCTCCTGAGTGATCACATAACAACTCCCTCCCTGGATCTAAGTCCGAACTCTCTTTCGACCAACCGCAGATAG 4083 47.56 MLKDPRRLYAPGRLYHIVERKPLRCGRFPPVVKTAVPVDGRFEHIVLSCNATSDHAIIWIEKEAKQALELMHKDDKALQIPPQQKMERQETLAREHSEEYKAALQRAVTLAVPHAYALAPYGTFGQTDDGEEEEESPGSSGGGSSRRKKETWNELIERLYDKDDSRSAVLKKSVLVSYFSVTVMKKSKLVSRLRKLRSSSDGGVHIRSRPIGVDVREEYANAFRTESYLDFWTRVVALKDVAVESTTASRLSSYRLFAEHLLDPNEPTVKRILNWAHLRPNSKSLLSDYFSHTANASLLCSRLLKDINHLRPEIAIQSLQNPEFNFKPLSIHNPFPEIIQNGCAKLLKQLEFNRDKARTKVKRVRYFQHGSAGLLVAVTASLTVILVTHGIGLVVVAAAPCLAGLVGAVKLARVKEVARVLDVAAKATYTLNRDFDTVGRLVARLNQEVEHMRGLMRFWVERGEGRDGRHGGVGEVARQLQQCRLNLGQHLDELEELFKRSMPPWWGKSSSKEAKKSKESFINTLQRKLRTADGKTNSRSGGSPRTCNDNDTISEQGTRSPILLRTISPSKQVSRCQSFSSERPQAQPLPLPGVQPSIVGRTDSGISISPKPSSERSSKPSSYLPLPRPACIPRRPNHADLDAELGVGSVSSESSNDSADLLDSRHRSPQATDYDLGSKTAAGSPSSAIVKDQSSIVTPPSSREPRKPANISLSNHIFSTSPKRRPLSSHVPNLQVPYNGNFCIAPDSSMSSPSRSPIRAFSTEQVINNAVSAGKFYMDLTFPGSGHCSSPGSGYNSGHNSMGGDLSGQLFLQQSRGSPEYSPAPSPRMTSPGPSSRVHSGAVTPIHPRAGGIPTESQTWPDEKQTHRLPLPPVAISNAPFSHSNSAATSPSVPRSPGRADNPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESGKQLMQEITLLSRLRHPNIVQYYGSETVEDRLYIYLEYVSGGSIYKLLQEYGQLGEVALRSYTQQILSGLAYLHAKSTVHRDIKGANILVDPTGRVKLADFGMAKHITGQSCPLSLKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGIGNGKELPEIPEHLSHDGKDFVRQCLQRNPAHRPTAAQLLEHPFVKHASPLERPISGSEHSGRNPSFLDSDRSAAPSSRLSTAVLHSSEIHIPRNLSCPVSPIGSPLVHSRSPQHPSGRMSPSPISSPRNMSGASTPLTGGSGAIPHQHLKQSPYLQEGFGSLPKPSIGPYSNGPSYQDSNPDIFQGMGIQPGSHIFSEQFGKPAWELYDGQAVLADRVSRQLLSDHITTPSLDLSPNSLSTNRR 1360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6378437 6392694 + CmaCh02G010710.1 Cma02g01071 288822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01071 1360 Gene3D Transferase(Phosphotransferase) domain 1 908 1185 - -
Cma02g01071 1360 MobiDBLite consensus disorder prediction 600 621 - -
Cma02g01071 1360 ProSitePatterns Protein kinases ATP-binding region signature. 916 939 IPR017441 GO:0005524
Cma02g01071 1360 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 502 1289 - -
Cma02g01071 1360 MobiDBLite consensus disorder prediction 1174 1189 - -
Cma02g01071 1360 ProSiteProfiles Protein kinase domain profile. 910 1160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01071 1360 CDD STKc_MEKK1_plant 909 1160 - -
Cma02g01071 1360 MobiDBLite consensus disorder prediction 1222 1257 - -
Cma02g01071 1360 MobiDBLite consensus disorder prediction 122 149 - -
Cma02g01071 1360 MobiDBLite consensus disorder prediction 673 709 - -
Cma02g01071 1360 MobiDBLite consensus disorder prediction 1164 1189 - -
Cma02g01071 1360 MobiDBLite consensus disorder prediction 878 896 - -
Cma02g01071 1360 MobiDBLite consensus disorder prediction 526 585 - -
Cma02g01071 1360 Pfam Protein kinase domain 911 1160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01071 1360 SUPERFAMILY Protein kinase-like (PK-like) 908 1244 IPR011009 -
Cma02g01071 1360 SMART serkin_6 910 1160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01071 1360 MobiDBLite consensus disorder prediction 1284 1300 - -
Cma02g01071 1360 MobiDBLite consensus disorder prediction 787 821 - -
Cma02g01071 1360 Coils Coil 86 106 - -
Cma02g01071 1360 MobiDBLite consensus disorder prediction 1218 1300 - -
Cma02g01071 1360 MobiDBLite consensus disorder prediction 787 913 - -
Cma02g01071 1360 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 502 1289 - -
Cma02g01071 1360 MobiDBLite consensus disorder prediction 526 709 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01071 Cma-Chr2:6378437 Cma03g01097 Cma-Chr3:7515915 1.49E-128 dispersed
Cma15g00700 Cma-Chr15:3346151 Cma02g01071 Cma-Chr2:6378437 6.45E-21 dispersed
Cma17g00427 Cma-Chr17:2520627 Cma02g01071 Cma-Chr2:6378437 2.36E-59 dispersed
Cma12g00393 Cma-Chr12:2030834 Cma02g01071 Cma-Chr2:6378437 4.28E-18 transposed
Cma15g01089 Cma-Chr15:6935813 Cma02g01071 Cma-Chr2:6378437 2.79E-77 wgd
Cma16g00114 Cma-Chr16:522963 Cma02g01071 Cma-Chr2:6378437 0 wgd
Cma18g01256 Cma-Chr18:9793275 Cma02g01071 Cma-Chr2:6378437 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68359 PF00069 Pkinase 1.70E-69 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01071 K20717 - csv:101222716 1507.27