Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01074 ATGTGGTTATTCAGAAGAAAAGGGCCCTCCGGGTTTTCGTCTTCTTCCACCGCCGAGGAAGTTACAAACGGAATCGATGGCACAGGACTCACCGCCATTGTTACAGGAGCGTCGAGTGGTATTGGCTCTGAAACTGCGCGTGTTCTTGCATTACGCGGAGTCCATGTTGTTATGGGTATTAGGAACTTAGAAGCTGGTAGAAATGTAAGAGAAACCATCATCAAGGAGAACCCCTCTGCAAAAATTGATGCCATGGAGTTGGATCTTAGCTCCATGGCTTCTGTGAGAAAATTTGCCTCAAATTATCAGTCAGCTGGGTTTCCACTTAATATCCTCATTAATAATGCAGGAGTCATGGCTGCCCCTTTTGAACTTTCAAAAGATAACATAGAACTGCAATTTGCAACAAATCATTTAGGTCATTTCCTCTTGACAGATCTACTGTTGGATAGTATGAAGAAAACTGCCATTAAAAGTAAAAAAGAAGGAAGAATTGTTAACGTCTCCTCAGAAGCTCACCGTTATACATATCCTGAAGGCATCCGATTTGACGGAATTAACGACGAATCAAGGTACAAAAAAATGCTAGCTTATGGCCAATCAAAGTTATGTAATGTGCTGCATGCCAATGAACTTACAAGACGTTTCAAGGAAGAAGGAGTAAACATAACTGCAAACTCACTTCACCCAGGAATAATTGCCACAAATCTTTTCCGCCACTTCAATTTTGGCAATGGTATTGCGAACACTGTCGGCAAACTCATATTTAAAAATGTTCAACAGGGTGCAGCAACAACCTGCTATGTAGCATTGCATCCACAAGTGAAGGGAGTGAGTGGTGAATATTTTCTGAATAGTAACCTAAACAAGGCAAGCCAACATGGGCAGAATGTTGATCTGGCTAAGAAACTTTGGGATTTTACCACTAACTTACTCAAATAA 942 41.19 MWLFRRKGPSGFSSSSTAEEVTNGIDGTGLTAIVTGASSGIGSETARVLALRGVHVVMGIRNLEAGRNVRETIIKENPSAKIDAMELDLSSMASVRKFASNYQSAGFPLNILINNAGVMAAPFELSKDNIELQFATNHLGHFLLTDLLLDSMKKTAIKSKKEGRIVNVSSEAHRYTYPEGIRFDGINDESRYKKMLAYGQSKLCNVLHANELTRRFKEEGVNITANSLHPGIIATNLFRHFNFGNGIANTVGKLIFKNVQQGAATTCYVALHPQVKGVSGEYFLNSNLNKASQHGQNVDLAKKLWDFTTNLLK 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6392968 6395774 - CmaCh02G010740.1 Cma02g01074 288825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01074 313 Pfam short chain dehydrogenase 31 180 IPR002347 -
Cma02g01074 313 Gene3D - 22 313 - -
Cma02g01074 313 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 313 - -
Cma02g01074 313 PANTHER RETINOL DEHYDROGENASE 2 313 - -
Cma02g01074 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 287 IPR036291 -
Cma02g01074 313 CDD retinol-DH_like_SDR_c_like 29 305 - -
Cma02g01074 313 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Cma02g01074 313 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Cma02g01074 313 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Cma02g01074 313 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01074 - - - csv:101214020 552.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00758 Cma-Chr1:4094272 Cma02g01074 Cma-Chr2:6392968 8.88E-36 dispersed
Cma02g01074 Cma-Chr2:6392968 Cma06g00309 Cma-Chr6:1470109 2.10E-134 dispersed
Cma09g01125 Cma-Chr9:6261402 Cma02g01074 Cma-Chr2:6392968 1.37E-25 dispersed
Cma13g01104 Cma-Chr13:8283561 Cma02g01074 Cma-Chr2:6392968 5.13E-37 dispersed
Cma20g00189 Cma-Chr20:908792 Cma02g01074 Cma-Chr2:6392968 4.36E-33 dispersed
Cma15g00851 Cma-Chr15:4299840 Cma02g01074 Cma-Chr2:6392968 6.20E-08 transposed
Cma15g00852 Cma-Chr15:4301531 Cma02g01074 Cma-Chr2:6392968 1.03E-06 transposed
Cma15g01087 Cma-Chr15:6913773 Cma02g01074 Cma-Chr2:6392968 6.63E-111 wgd
Cma16g00594 Cma-Chr16:3067069 Cma02g01074 Cma-Chr2:6392968 8.62E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g720 . Blo15g00173 . . . . . . . . Cma02g01074 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00121 . . . . . . . . . . . Cmo02g01090 Cmo15g01147 . . . . . Cpe13g00263 Bhi12g00032 . . . . . Lcy12g0040 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01074 Cma_Chr02 FPKM 1.173664 1.33041 65.46579 65.033798 6.360345 6.89533 6.557309 0.575604 0.621092 1.081655