Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01084 ATGGCTGCCGGAGACGACGACTGGGATCTCTCCGCCGTCGTCCGGAGCTGCTATTCAGGCTCCTCCACCTCCTCTTCCTCCACCGCCGCCGACCCAACTGCCGCCTCCGCTGCAGAAACCGCCTTGTCTTGTCTTGCTTCCTTAACTTTTGACGACGATCCAAACAACGTCGCATTCTCCTTTTCCGACATCCTTCACCCCCAACAGCCCAACGGCTTCCATGAATTACACCAAGCCTTCATTTCTTTCCTCCCCAACCCCGTCGCCCCCGCCGTCGCCCCCGTCGCACCGGAAATCCCCAATCCGGTTCCAACCCGCCAATCCCGACACGGAATTAAACCCATTCGACCACAGCCAGATCCCGGAGCGGTGGCGCTGCAATCCCACCACCGGCAACAGCCACTTTTCCGGCCAGACTTCCCAAATTCACCAATGACGCCTCCTCACATACCCAAATCGAGAAAAAGGCAAAATCAACAGAAGAGAACCGTATGCCATGTGACTGCTGATAATCTCTCAACAGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGATCTCCCTACCCAAGGAACTATTACCGTTGCAGCAGCTCAAAAGGGTGTGGCGCAAGAAAGCAAGTTGAACGGAGCACCGCCGACCCAGAAACTTTCATCGTCACATACACTGGAGATCACACTCATCCACGTCCAACTCATCGGAATTCCCTCGCCGGGAGTTCCCGAAACAGGTCGTCGTCTGCAATCCCCACCAAAAACCTGACGATGGGAGACCCCGATCGGTCATTGATCGGCACAGCCACCGTGGGCTCTCCGATGACACCGCTTAACGACGACGGTGGGAGTGGAGAGAAAGAAGGAGAGATTTTGGAGGATTTGAGCATTGATAGTGAGGAGTACGAGGATAATGATATTCTGATTCCAAATTTGATGATGAGAAATGAAATCTTTGTTGGGTTTGAGGAGCTTGGTTGTAGCCCTCGAAGGAAGGCTTGA 1005 53.73 MAAGDDDWDLSAVVRSCYSGSSTSSSSTAADPTAASAAETALSCLASLTFDDDPNNVAFSFSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPVAPEIPNPVPTRQSRHGIKPIRPQPDPGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRQNQQKRTVCHVTADNLSTDMWAWRKYGQKPIKGSPYPRNYYRCSSSKGCGARKQVERSTADPETFIVTYTGDHTHPRPTHRNSLAGSSRNRSSSAIPTKNLTMGDPDRSLIGTATVGSPMTPLNDDGGSGEKEGEILEDLSIDSEEYEDNDILIPNLMMRNEIFVGFEELGCSPRRKA 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6451561 6452816 + CmaCh02G010840.1 Cma02g01084 288835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01084 334 ProSiteProfiles WRKY domain profile. 168 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma02g01084 334 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 326 IPR044810 GO:0003700
Cma02g01084 334 MobiDBLite consensus disorder prediction 225 263 - -
Cma02g01084 334 MobiDBLite consensus disorder prediction 236 256 - -
Cma02g01084 334 MobiDBLite consensus disorder prediction 114 162 - -
Cma02g01084 334 Pfam WRKY DNA -binding domain 175 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma02g01084 334 SUPERFAMILY WRKY DNA-binding domain 168 234 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma02g01084 334 SMART WRKY_cls 173 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma02g01084 334 Gene3D WRKY domain 156 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma02g01084 334 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 6 326 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01084 Cma15g01067 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01084 Cma-Chr2:6451561 Cma06g01087 Cma-Chr6:7334632 5.50E-54 dispersed
Cma14g02067 Cma-Chr14:14362158 Cma02g01084 Cma-Chr2:6451561 7.25E-54 wgd
Cma15g01067 Cma-Chr15:6759134 Cma02g01084 Cma-Chr2:6451561 2.94E-50 wgd
Cma16g00580 Cma-Chr16:2998775 Cma02g01084 Cma-Chr2:6451561 1.46E-39 wgd
Cma02g01084 Cma-Chr2:6451561 Cma04g00724 Cma-Chr4:3682891 5.10E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34502 PF03106 WRKY 6.70E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01084 K13425 - cmo:103482922 425.246