Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01088 ATGGAACAGAAGCACATTTTTCTGTCTGCTTTGGGCGTTGGGGTTGGAGTTGGGGTTGGCCTTGGATTGAGCTCTGGACAAGCTGTTGGCAAATGGGTTGCTGGGAATACCTCTTCTGATGAGATTACAGGGCAGAAGATTGAACAGGAGCTCATCAGGCAGCTCCTTGATGGCAGAAATAGCGATGTTACTTTTGATGAGTTTCCTTATTATCTTAGCGAGAGGACGAGGATGCTCTTGATGAGTGCTGCATATGTTCGTTTGAAGCATTGTGACATCTCCAAGCACACCAGAAATCTTTCACCAGCCAGTCGGGCGATTTTGCTTTCAGGACCGACAGAACTGTACCACCAAATGCTTGCCAAGGCTCTGGCGCAACACTTCGAGTCGAAGTTGCTGTTGTTAGACGTTTCTGACTTTTCTCTAAAGATGCAGAGCAAATATGGTTGTGCCAAGAAAGAACCGTCATTCAAGAGGTCCATCTCTGAGGTGGCGTTGGAGCGTGTGTCTAGCGTTTGGGGTTCCTTCTCGATTCTTCCTACGAGTGGAAATACTAGAGGCAATTTAAGAAGGCAAAGCAGTACTACAGACATTCAATCAAGAAGTACCGATGGCCCGTCTAATCCTCCAAAACTTCGGAGAAATGCTTCTACTGCGTCTGATATTAGTAGTATCTCATCGAATTGTGCTTCAACAAATTCAGCTTCTGTCAAGCGCACAAATAGTTGGTGTTTTGATGAGAAACTTTTTCTTCAGTCGCTTTATAAGGTCTTGGTGTCGGTATCCGAAACCAATTCCATAATTTTGTATCTGCGAGATGTCGAGAGACTTCTTCTTCAGTCACAGAGGCTATACAATCTGTTCCATAGATTTCTGAACAAGCTCTCTGGATCAGTTCTAGTACTCGGTTCGAGAATGGTAGACTTGGAAAACGATTGCGGCGATGTCGATGACAGACTGACCTGTTTATTTCGGTATAGTGTCGAAATTCGACCCCCTGAAGACGAGAATCATCTTGTCAGCTGGAAAGCTCAATTGGAAGAGGACATGAAGATGATTCAGTTCCAAGATAACAAAAACCACATTGCTGAAGTTCTTGCTGCAAATGATCTTGAATGTGATGATCTTGGATCAATCTGCCATGCAGACACCATGGTTCTTAGTAATTATATCGAAGAAATCGTCATATCGGCGATATCCTATCATTTAATGAACAACAGGGATCCGGAATATCGAAATGGAAAACTTCTGATATCTTCCAAGAGCTTATCCCATGGATTGAGTATATTCCAGGAAGGAAATAATGAAGGGAAAGACACTCTAAAGCTAGAGACGAATGCAGAATCATCGAAGGAAGCCCCGGGGGACGATGCTGTCGGGGCGAAGACTGAATCAAAATCTGAAAATCCAGCTGCAGAAAACAGAGGAGAGGCAGATAAATCTGTACCTATAGAAGTCTTTCCCGACAACGAATTTGAGAAGCGTATAAGACCGGAAGTTATCCCTGCAAACGACATCGGGGTGACATTTGCAGACATCGGTTCCTTGGATGAGATCAAAGAGTCCTTACAGGAATTAGTCATGCTTCCTCTTCGACGACCAGACCTCTTTAAAGGCGGGCTTCTCAAACCTTGTAGAGGTATTTTGCTTTTCGGCCCTCCTGGTACAGGTAAAACGATGCTGGCAAAGGCCATTGCTAACGAAGCTGGAGCAAGTTTCATTAATGTTTCGATGTCCACAATCACTTCTAAATGGTTTGGGGAAGATGAAAAGAACGTTCGGGCGCTGTTTACGCTTGCAGCAAAAGTCTCACCTACGATTATTTTTGTCGATGAAGTCGATAGCATGCTTGGCCAGCGGACTAGAGTGGGAGAGCATGAGGCCATGCGGAAGATTAAAAATGAATTCATGTCACACTGGGATGGATTGCTGACTAGAAATGATGAGAGAATACTAGTTCTTGCTGCAACCAACAGGCCATTTGACCTCGATGAAGCCATCATTCGTCGATTTGAGCGTAGAATTATGGTTGGTCTTCCATCAGTGGAGAGCAGGGAAATGATCTTAAGAACTCTTCTTTCAAAGGAGAAGGCTGAAGATCTTGATTTCAAGGAGCTTGCAACTATGACAGAAGGGTACAGTGGAAGTGATCTCAAGAATTTGTGCGTGACGGCAGCTTATCGGCCTGTTCGGGAGCTCTTGCAACAAGAGAGATTGAAGGATTTGGAAAAGAAGCAAAGAGAGCTGAAGGAGAAGGAGCAGGAGAAGGAGGAGGGAACGGAGACAGAGATGGAGACCAAAAACAAGAACGAGAACGAGAATGAGAACGAGAACGACAAGAAGAAGGAAAATGACTCGGAAGATATGGCAGTTACGAAAGAGGAAGAAAAAGAGGAACAAGTGATCATTCTGAGGCCTTTAAATATGGATGATATGAGACAGGCAAAAAATCAGGTTGCTGCAAGTTTTGCTTCTGAAGGATCAGTGATGAATGAGTTGAAGCAATGGAATGAGTTGTATGGAGAGGGAGGTTCAAGAAAAAAGCAACAGCTTACTTACTTCCTATAG 2568 44.12 MEQKHIFLSALGVGVGVGVGLGLSSGQAVGKWVAGNTSSDEITGQKIEQELIRQLLDGRNSDVTFDEFPYYLSERTRMLLMSAAYVRLKHCDISKHTRNLSPASRAILLSGPTELYHQMLAKALAQHFESKLLLLDVSDFSLKMQSKYGCAKKEPSFKRSISEVALERVSSVWGSFSILPTSGNTRGNLRRQSSTTDIQSRSTDGPSNPPKLRRNASTASDISSISSNCASTNSASVKRTNSWCFDEKLFLQSLYKVLVSVSETNSIILYLRDVERLLLQSQRLYNLFHRFLNKLSGSVLVLGSRMVDLENDCGDVDDRLTCLFRYSVEIRPPEDENHLVSWKAQLEEDMKMIQFQDNKNHIAEVLAANDLECDDLGSICHADTMVLSNYIEEIVISAISYHLMNNRDPEYRNGKLLISSKSLSHGLSIFQEGNNEGKDTLKLETNAESSKEAPGDDAVGAKTESKSENPAAENRGEADKSVPIEVFPDNEFEKRIRPEVIPANDIGVTFADIGSLDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELLQQERLKDLEKKQRELKEKEQEKEEGTETEMETKNKNENENENENDKKKENDSEDMAVTKEEEKEEQVIILRPLNMDDMRQAKNQVAASFASEGSVMNELKQWNELYGEGGSRKKQQLTYFL 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6468535 6477214 - CmaCh02G010880.1 Cma02g01088 288839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01088 855 ProSitePatterns AAA-protein family signature. 651 670 IPR003960 GO:0005524|GO:0016887
Cma02g01088 855 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 855 - -
Cma02g01088 855 MobiDBLite consensus disorder prediction 184 229 - -
Cma02g01088 855 MobiDBLite consensus disorder prediction 747 799 - -
Cma02g01088 855 CDD AAA 546 679 - -
Cma02g01088 855 MobiDBLite consensus disorder prediction 446 482 - -
Cma02g01088 855 Coils Coil 732 787 - -
Cma02g01088 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 753 IPR027417 -
Cma02g01088 855 Pfam AAA+ lid domain 700 743 IPR041569 -
Cma02g01088 855 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 855 - -
Cma02g01088 855 SMART AAA_5 544 681 IPR003593 -
Cma02g01088 855 Gene3D - 507 679 IPR027417 -
Cma02g01088 855 Gene3D - 680 757 - -
Cma02g01088 855 Pfam ATPase family associated with various cellular activities (AAA) 548 678 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01088 - - - csv:101216426 1390.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01088 Cma-Chr2:6468535 Cma17g01099 Cma-Chr17:7736117 1.01E-14 dispersed
Cma20g00164 Cma-Chr20:798139 Cma02g01088 Cma-Chr2:6468535 9.81E-57 dispersed
Cma15g01059 Cma-Chr15:6706621 Cma02g01088 Cma-Chr2:6468535 0 wgd
Cma16g00575 Cma-Chr16:2963731 Cma02g01088 Cma-Chr2:6468535 0 wgd
Cma02g01088 Cma-Chr2:6468535 Cma04g00716 Cma-Chr4:3627520 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g809 Blo06g01180 Blo15g00212 . . . . . . . . Cma02g01088 . Car02g00831 . . . . . . . . . . . . . . . . . . . Cone5ag0903 . . . . . . . . Bda06g00733 . . Bpe12g00487 . . . Cmo02g01109 . . . . . . . Bhi12g00765 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01088 Cma_Chr02 FPKM 28.365582 30.212736 14.886104 14.850545 10.564253 12.263449 11.200158 29.037457 27.667131 26.673042