Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01091 ATGGCCCCATTCAATTTTCTGCTTATGATTTTCTTTAATCAAGTTATGGTCCATAGTGTTCATATCTTCCTACAAGTTTTAGTTCCCGAATTCATGGTTTCTATGACTTCTAGGTGCTGGTACTTCGTTATGGAAAGCGGAACATATCAAGAATATAAGCCTGAGGAGTTGTCTGAGGTTCCATCATTAATCAAACACATATCATCAATTGAAGTGGTTCCCTTTGATGGGATAGAAGAGGGTAGCCTTCCAAATAATCATTCCCCCTCTACCCTGCCTACTGGAAATGCATTATCACCTGCTGAGCAAAGTGATGATGAACTTCAGTTCATTAACCATCAAAGAAAGCATTCTGTTTCTATCAGTATGCCACCCTCCCCTGTGGGAGTTCACTTACAGCCTTCAAAACGAGTTCTATTCGGTGGCGAACAGATTCTAAACAATGAAGCCTTGGGTCCTGCTGCTGGGGCCAAACCACAGAAAGCTGCAAAGTTTCACTCTCAGCCAATTCCGAGGGGTTCTACGTTTGACGTGTCGAGGAACACGAATGCTGCACATCACCCTAGTATGAGAAGATTGAAGGACAAAAGATTTGATTCCTTCAAAACATGGTCTGGAAAACTTGAAAGGCAATTAACTCTACTTAGTGGAAAGTCAGCAAGACAAACTAGGCCAGAGGAAATTGAAGTGCAAAGAGAAGGAATCGAGAATAACATACCGGTTCACCGTTACTTCGATGCATTGGAAGGTCCAGAGCTGGAAACTCTAAGGGCTTCAGAGGAAATACTGCTTCCAGAAGACAGGACATGGCCTTTTCTACTCCGATTTCCTATCTCGTCGTTCGGTATCTGTCTTGGTGTTAGTAGCCAAGCAATCATGTGGAAAACACTGGCCACTTCTGTCTCCACGAAGTTTCTTCATTTGAGCTTGAAAATAAATCTCATTTTATGGATAATTTCCATTGCTCTTGTAGTCACCATCGCTTCCGTTTACCTTCTGAAAATGCTTCTGTACTTCGAAGCAGTTCGTCGCGAATACTACCACCCTATTCGTGTCAACTTTTTCTTTGCACCGTTGATATCTCTCTTGTTCTTAGCCATTGGTGTTCCTCCATCAGTTGCCACTAACCTGCATCCAGCCATTTGGTATGTTCTCATGGCTCCATTTCTATGCCTTGAGCTTAAGATTTATGGGCAATGGATGTCAGGAGGCCAACGCAGATTGTCAAAAGTGGCTAATCCTACAAACCATCTTTCCGTTGTGGGGAATTTTGTGGGGGCTTTGTTGGGAGCCTCAATGGGACTAAAGGAAGGGCCCGTATTCTTCTTTGCTATTGGAATGGCTCACTATTTAGTCCTTTTTGTAACTCTCTACCAGAGACTACCAACCAATGAGACACTCCCAAAGGAACTGCATCCAGTGTTCTTTCTTTTCATAGCAGCACCAAGTGTGGCATCCATGGCATGGGCAAAAATTCAAGGTTCCTTTGACAACGCTTCACGAATCATTTACTTTATCGCCCTGTTCCTCTACTTCTCACTGGTTGTTCGAGTCAACTTTTTCCGGGGCTTTAAGTTCTCGCTGGCCTGGTGGGCATATACTTTTCCCATGACTGGTGCTGCAATTGCAACTATAAAATACTCAATTGAAGTTACAAATACAGTAACACAAGTTCTGTCTGTTGTACTCTCTGCCACTGCTGTAATCATAGTGACAGCTCTCCTTGCATCAACGATCATCCACGCCTTTGTGCTTCGTGACCTCTTTCCTAACGACATCGCTATTGCCATTAGCAACAGAAAGCCGAAACCACAATGGAACTGGTTGCATCATCTAAAACAAGGAAGTTCAGAAGCTCAAGACATTGAAAACTTCTTGAAGTTTTCAAACTCAGATAACAAGGATTTAGAAGCATCTGAAGGACCATCAACCCTCGTAGGCCGAGACACGAACCTCCAACCGTCAAACGAATAG 1974 43.36 MAPFNFLLMIFFNQVMVHSVHIFLQVLVPEFMVSMTSRCWYFVMESGTYQEYKPEELSEVPSLIKHISSIEVVPFDGIEEGSLPNNHSPSTLPTGNALSPAEQSDDELQFINHQRKHSVSISMPPSPVGVHLQPSKRVLFGGEQILNNEALGPAAGAKPQKAAKFHSQPIPRGSTFDVSRNTNAAHHPSMRRLKDKRFDSFKTWSGKLERQLTLLSGKSARQTRPEEIEVQREGIENNIPVHRYFDALEGPELETLRASEEILLPEDRTWPFLLRFPISSFGICLGVSSQAIMWKTLATSVSTKFLHLSLKINLILWIISIALVVTIASVYLLKMLLYFEAVRREYYHPIRVNFFFAPLISLLFLAIGVPPSVATNLHPAIWYVLMAPFLCLELKIYGQWMSGGQRRLSKVANPTNHLSVVGNFVGALLGASMGLKEGPVFFFAIGMAHYLVLFVTLYQRLPTNETLPKELHPVFFLFIAAPSVASMAWAKIQGSFDNASRIIYFIALFLYFSLVVRVNFFRGFKFSLAWWAYTFPMTGAAIATIKYSIEVTNTVTQVLSVVLSATAVIIVTALLASTIIHAFVLRDLFPNDIAIAISNRKPKPQWNWLHHLKQGSSEAQDIENFLKFSNSDNKDLEASEGPSTLVGRDTNLQPSNE 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6484598 6488246 + CmaCh02G010910.1 Cma02g01091 288842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01091 657 CDD TDT_SLAC1_like 275 578 - -
Cma02g01091 657 MobiDBLite consensus disorder prediction 632 657 - -
Cma02g01091 657 MobiDBLite consensus disorder prediction 635 657 - -
Cma02g01091 657 MobiDBLite consensus disorder prediction 82 104 - -
Cma02g01091 657 PANTHER SLAC1-LIKE PROTEIN-RELATED 59 642 - -
Cma02g01091 657 MobiDBLite consensus disorder prediction 83 104 - -
Cma02g01091 657 Pfam Voltage-dependent anion channel 276 579 IPR004695 GO:0016021|GO:0055085
Cma02g01091 657 Gene3D - 272 589 IPR038665 -
Cma02g01091 657 PANTHER - 59 642 IPR030183 GO:0006873|GO:0008308|GO:0016021
Cma02g01091 657 MobiDBLite consensus disorder prediction 172 186 - -
Cma02g01091 657 MobiDBLite consensus disorder prediction 154 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01091 - - - csv:101217604 984.556
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01091 Cma15g01057 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01091 Cma-Chr2:6484598 Cma19g00914 Cma-Chr19:8242011 6.35E-69 dispersed
Cma06g00740 Cma-Chr6:3738863 Cma02g01091 Cma-Chr2:6484598 2.85E-170 transposed
Cma16g01028 Cma-Chr16:7902238 Cma02g01091 Cma-Chr2:6484598 1.59E-164 transposed
Cma15g01057 Cma-Chr15:6692843 Cma02g01091 Cma-Chr2:6484598 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g812 Blo06g01066 Blo15g00106 . Bda07g01912 Bpe03g00163 Bpe07g01000 Bma10g01268 . . . Cma02g01091 Cma15g01057 Car02g00832 Car15g00981 . Cpe05g00631 . . . . . . . . Cla01g00081 Cam01g0081 Cec01g0082 Cco01g0082 Clacu01g0081 Cmu01g0083 Cre09g2426 Cone1ag1202 Cone5ag0904 . Cone15ag0048 . Csa05g00094 Chy09g01400 . Blo07g00357 Blo09g00050 . . . Bpe12g00360 . Bma12g01185 . Cmo02g01110 Cmo15g01116 . . . . . Cpe13g00284 Bhi12g00763 . . Lac11g0088 Hepe06g0736 . Lcy12g0069 . . . . . . . Lsi09g00066 . . Cme09g01946
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003004 1 1 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 2 1 1 1 1 5 4 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01091 Cma_Chr02 FPKM 5.478907 6.981882 3.127957 3.246184 5.748365 5.955817 6.201075 0.643131 0.655016 0.781375