Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01092 ATGTCGGCTGCACCAAGTCCTTGTTGCCATTCTTTCTCCTTTCGTTTTGCTCCTTCCAATTCTAGGTTTTCGATTAGGGTTCATTTAAAGCCTTTGCTCCCCCGTTTTACTCTCAATTCAAGCATCCATTGCGTCAGTACTCTCTCCCGACGCCGCAGAAATAAATGGGAGATTCTGTGCTTTCGGCGTGAAGAGTCCTCACCGGAAAATTTTGAGTCCAAGTCTGCGGAAGAAAAATTGGCAGAAGACCTGGTGGCAACCCCCGAAGTCAGCCAATCCAGTGAGACAAGGAAAGATTGGGTGTCTAGTTTATACAAGGTCATTGAACCAATATTTGTTGCAAAGCCATGGGTTGTTCCATGGACAGCCAAAACCATTGTTCAGGTCATGCTTCTCTGGGTTGCATCATTCTGGGTAATCGGATCATGGATAATTCCAATAATAGCCCATACAGCAGGATACAGAAAGGAATTCATGACGTACAGAGGGCAAGCCTTGTACAGCCTTCTAACAGATGTGGTCGAAGGGCTTACTGGGATGGCGATTCTGCATCGCTGCCTCTCAAGATTCCATCCCCTTCCTCCCGGCTGGTTCAAATTCCACTTTGAAGGGAATTGGCAATTCGATGTTGGCTTAGGCTGCCTTATGTTTCCACTCATTAACCGTCTTTCACAGGTGAATCTAAACTTGTTGCCCATCCTTCCATCCGCCCCAGTTACCGTCTCGAGTGTCGAGCAATCAATCGTTGCTAGAGACCCGGTGGCAATGGCACTCTATGCAGTGGTCGTGTCCGTGTGTGCCCCCATCTGGGAGGAGATCGTGTTCCGTGGGTTCCTTCTACCGTCGCTGACGAAATATATGCCGGTATGGTGCTCCATTTTGGTGAGTTCAGTTGCCTTTGCTCTAGCACATTTCAATATGCAGAAGATGCTACCTCTGATACTGCTTGGGGTGGTGATGGGTACTGTATTTGCAAGGACAAGGAACCTTCTACCATCAATGTTATTGCATAGCCTTTGGAATGCCTTTGTATTCTTAGATCTTATGAGACCTGATCAGTATTGTATCCCATCTTTCCCATATAGCAGAAGGCTGACAAAGCCTTCTCCTTCTTCCTCCTCCTCTTCCGCAGCCATGGAAGCTTCTTCTCAGCCACTGTCCATAGAAAGCTTCTCATACAGGTGGTTGGTGAACATCAGATCATCCTTTGAAAGCCGTCCTAACTCCTTCAGAACCTCTCTTGATGAAGCTTCCTTCATTGAGATGGATCCCACAATGCCACCCTCCAAGAGATTCTTGATCTCCTCCTCTCGCCCTTCTCACGACTTCAACTTCCCCTCTCCGTCCCCGTCCCCGTGTCTACCTCTCGTCCACGCTGATCAGCTCATCTCTAATGGCTACCTCCTCCCTGCGTACACGCCGAGTGCCGCTGCTTCACCCGTCGTCAAGCCACTGGCAAAACTGGACTCGTCGTGTTCATTGAGAAAGTCGTGCCGGAGATTATCAAGGCAGGTTTTTGAGAAATATTTGAACTTTTTTAGGCCAATTTGCAGAAGAATTCAAGGGAAAGTGGAGAAATTGTTCCATGGAGGATCTAGCCGCCCAATTTCAAGAGAAACCCAGCAGTGGAGAAGATCTTGTGATTCTGAGAGCTCAATTTATGATGCAGTTCTCCACTGCAAAAGGTCCATAGATGATGAAGATGATGAAGATGATGAACATGATGAACATGATGAACATAGGGGGCAGTAG 1752 47.6 MSAAPSPCCHSFSFRFAPSNSRFSIRVHLKPLLPRFTLNSSIHCVSTLSRRRRNKWEILCFRREESSPENFESKSAEEKLAEDLVATPEVSQSSETRKDWVSSLYKVIEPIFVAKPWVVPWTAKTIVQVMLLWVASFWVIGSWIIPIIAHTAGYRKEFMTYRGQALYSLLTDVVEGLTGMAILHRCLSRFHPLPPGWFKFHFEGNWQFDVGLGCLMFPLINRLSQVNLNLLPILPSAPVTVSSVEQSIVARDPVAMALYAVVVSVCAPIWEEIVFRGFLLPSLTKYMPVWCSILVSSVAFALAHFNMQKMLPLILLGVVMGTVFARTRNLLPSMLLHSLWNAFVFLDLMRPDQYCIPSFPYSRRLTKPSPSSSSSSAAMEASSQPLSIESFSYRWLVNIRSSFESRPNSFRTSLDEASFIEMDPTMPPSKRFLISSSRPSHDFNFPSPSPSPCLPLVHADQLISNGYLLPAYTPSAAASPVVKPLAKLDSSCSLRKSCRRLSRQVFEKYLNFFRPICRRIQGKVEKLFHGGSSRPISRETQQWRRSCDSESSIYDAVLHCKRSIDDEDDEDDEHDEHDEHRGQ 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6489321 6494571 - CmaCh02G010920.1 Cma02g01092 288843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01092 583 Pfam Type II CAAX prenyl endopeptidase Rce1-like 257 342 IPR003675 GO:0004222|GO:0016020|GO:0071586
Cma02g01092 583 MobiDBLite consensus disorder prediction 564 583 - -
Cma02g01092 583 PANTHER - 46 399 - -
Cma02g01092 583 PANTHER CAAX AMINO TERMINAL PROTEASE 46 399 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01092 K07052 K07052; CAAX protease family protein - csv:101217840 644.039
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01092 Cma18g01287 CCT
Cma02g01092 Cma16g00087 CCT
Cma02g01092 Cma18g01287 ECH
Cma02g01092 Cma16g00087 ECH
Cma02g01092 Cma15g01055 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01092 Cma-Chr2:6489321 Cma15g01055 Cma-Chr15:6668385 1.50E-87 dispersed
Cma15g01054 Cma-Chr15:6661380 Cma02g01092 Cma-Chr2:6489321 0 wgd
Cma16g00087 Cma-Chr16:382713 Cma02g01092 Cma-Chr2:6489321 3.07E-42 wgd
Cma18g01287 Cma-Chr18:9929227 Cma02g01092 Cma-Chr2:6489321 1.91E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g813 Blo06g01067 Blo15g00104 Bda05g00105 . Bpe03g00249 Bpe07g01001 Bma10g01271 . Cmo16g00091 Cmo18g01316 Cma02g01092 Cma15g01055 Car02g00833 Car15g00980 Sed02g1698 Cpe05g00630 Cpe14g00071 Bhi01g01425 Tan01g0174 Cmetu06g0181 Lac11g0089 Hepe07g0107 Mch10g0109 . Cla01g00080 Cam01g0080 Cec01g0081 Cco01g0081 Clacu01g0080 Cmu01g0082 Cre09g2427 . . . . Lsi05g01176 Csa05g00093 Chy09g01401 Cme06g01055 . . Bda06g00770 Bda15g00768 . Bpe12g00361 . Bma12g01186 . Cmo02g01112 Cmo15g01114 Cma16g00087 Cma18g01287 Car16g00077 Car18g01205 Cpe09g00054 Cpe13g00289 Bhi12g00762 . . . . . Lcy12g0070 Cla05g00932 Cam05g1019 Cec05g1023 Cco05g1019 Clacu05g1008 Cmu05g0961 Cre05g1042 Lsi09g00065 Csa03g02172 Chy06g01282 Cme09g01947
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005068 1 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 1 1 2 1 1 4 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01092 Cma_Chr02 FPKM 6.927011 7.659672 7.32851 8.436127 12.667191 13.39116 13.290408 9.019035 9.402767 8.841696