Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01096 ATGAGCTTCAAAAGGGACCTTGAGCTTGTCATCTTTGTTTTCTCTGCAGTCTTCTGGTTTGCAGCGAATGTTTATCCGGTGATGTCGGAGCCCATCAAAGACAAGGAAGCTTTGCTTAATTTTCTCAACAAGATGGATCACTCAAACTCGCTCAATTGGAAGAAGAGCACTTCTTTGTGCAAAGAATGGATGGGAGTTCAATGCAACAATGATGAATCCCAAGTTGTAGTTCTTAGATTGGCTGAAGTTGGCCTACACGGTTCGATCCCGATCAACACTCTCGGTCGACTATTGGGGCTTGAAACTCTTAGCCTTGGATCAAATTACATATCAGGGCCTTTCCCTTCTGACTTCCTAAAGCTGAGAAATCTCAGTTCACTCTACTTGCAAAACAACAAGTTCTCCGGTCCATTGCCATTGGATTTCTCTGTATGGAAGAATCTCAACATCATTGATCTGTCAAACAATGCCTTCAATGGGAGCATCCCTCACTCGATATCGAACACGACACATCTAACGACATTAAACCTTGCCAATAACTCACTCTCTGGTGAGATTCCAGACAACCTTCCTAGTTTGCAAGAGTTGGATCTTTCAAACAACAATCTCACGGGATATCTCCCTCAGTCCCTTAAAAAATTTCCAAGTTGGGCATTCTTTGGTAACAACCTCATGCTCAAAAATGCCGTTTCTCCGGCTCACGAACCGGTGCCGAGTACTCGACCGTTGAAGAAAGGCACAACATCACTTGGTGAAGCAGCAATTTTAGGCATTATAATTGGAGGTTCTGCAACGGGGTTAGTCATAGCAGTCATTTTGATGGTTATATGTTGCTCAAACAGAGGAAGACTAAAAAACAAAGCCTCATCAAAGCTGGACAAGCAAGAACAGTTTGTGAACAAAAGGGTGTCTGAGACACAAAACAACAACCTCAAGTTTTTTCGGAGTCACGGCCTTGAGTTCGACTTGGAGGACTTGTTGAGGGCGTCTTCCGAGGTGCTCGGGAAGGGGATGTCGGGGACGACGTATAAGGCGACACTAGAAGACGGCAATGCCGTGGCAGTGAAGAGGTTGAAGGAAGTGTGTGTTTCAAAGAAGGAATTTGAGCAACAGATGGAGGTGCTTGGGAGCATTGATCATGAAAATGTGTGTGGTCTAAGGGCATATTATTATTCAAAGGATGAGAAACTCATGGTGTTTGAGTTCTATCAACATGGAAGTGTCTCTGCAATATTGCATGTTGCGAGAGAGAAAGGGCAGTCACCTCTAGATTGGGAAACTCGGCTCCGAATCGCCATTGGCGCAGCCAGAGGAATCGCTCACATCCACTCTGAAGCCTGCGGCAAGCTCGTCCATGGCAACATCAAGGCCTCAAACGTTTTTCTCAACTCCGCCGGTTACGGTTGCATTGCCGACGTCGGCGTCGCCGCTCTGATGAACCTTATGGCCCTGGCGGCAACCAGAGCCGCTGGATACCGCGCTCCCGAACTCAAAGATTCACGCAAAGCGTCTCAAGCCTCCGATACCTACAGCTTCGGCGTCGTGCTTCTGGAACTCCTCACTGGAAAATTTCCACTGCATACAAAGTGTGGCGGCGGCGGCGGCGGCGGCGGGGATCAGATCATCCACCTTGTGCGGTGGGTGAACGCGGTGGTTCGAGAGGAGTGGACGGCGGAGGTGTTTGATGTGGAGCTTTTGAGATATCCAAACATAGAGGAGGAGATGTTAGAGACGCTGCAAATAGCGCTATCTTGTGTAGGAAGAGTTCCGGATGATCGGCCGTCAATGGCGGATGTGGCAGCTCGGTTAGAGGGAGTTCGCCAGGTGAGCGGCGGAGGAAACCAACCGGCGCCGCCGCCAGCATTGCCACGTGGAGCGGAGGAGGTGATCCAGATTCAGGTGAATGTGGATGAGGGTGAAGAGGGAGCTCCGTCGAAATCGAATTGA 1947 49.0 MSFKRDLELVIFVFSAVFWFAANVYPVMSEPIKDKEALLNFLNKMDHSNSLNWKKSTSLCKEWMGVQCNNDESQVVVLRLAEVGLHGSIPINTLGRLLGLETLSLGSNYISGPFPSDFLKLRNLSSLYLQNNKFSGPLPLDFSVWKNLNIIDLSNNAFNGSIPHSISNTTHLTTLNLANNSLSGEIPDNLPSLQELDLSNNNLTGYLPQSLKKFPSWAFFGNNLMLKNAVSPAHEPVPSTRPLKKGTTSLGEAAILGIIIGGSATGLVIAVILMVICCSNRGRLKNKASSKLDKQEQFVNKRVSETQNNNLKFFRSHGLEFDLEDLLRASSEVLGKGMSGTTYKATLEDGNAVAVKRLKEVCVSKKEFEQQMEVLGSIDHENVCGLRAYYYSKDEKLMVFEFYQHGSVSAILHVAREKGQSPLDWETRLRIAIGAARGIAHIHSEACGKLVHGNIKASNVFLNSAGYGCIADVGVAALMNLMALAATRAAGYRAPELKDSRKASQASDTYSFGVVLLELLTGKFPLHTKCGGGGGGGGDQIIHLVRWVNAVVREEWTAEVFDVELLRYPNIEEEMLETLQIALSCVGRVPDDRPSMADVAARLEGVRQVSGGGNQPAPPPALPRGAEEVIQIQVNVDEGEEGAPSKSN 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6522935 6527224 - CmaCh02G010960.1 Cma02g01096 288847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01096 648 Pfam Leucine Rich Repeat 192 214 IPR001611 GO:0005515
Cma02g01096 648 Gene3D Ribonuclease Inhibitor 146 228 IPR032675 -
Cma02g01096 648 Pfam Protein kinase domain 331 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01096 648 ProSiteProfiles Protein kinase domain profile. 328 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01096 648 PANTHER LRR RECEPTOR-LIKE KINASE 21 614 - -
Cma02g01096 648 SUPERFAMILY Protein kinase-like (PK-like) 331 604 IPR011009 -
Cma02g01096 648 Gene3D Transferase(Phosphotransferase) domain 1 404 613 - -
Cma02g01096 648 Gene3D Phosphorylase Kinase; domain 1 293 402 - -
Cma02g01096 648 PRINTS Leucine-rich repeat signature 172 185 - -
Cma02g01096 648 PRINTS Leucine-rich repeat signature 190 203 - -
Cma02g01096 648 SUPERFAMILY L domain-like 45 216 - -
Cma02g01096 648 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Cma02g01096 648 Gene3D Ribonuclease Inhibitor 33 145 IPR032675 -
Cma02g01096 648 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Cma02g01096 648 PANTHER OS05G0588300 PROTEIN 21 614 - -
Cma02g01096 648 MobiDBLite consensus disorder prediction 607 626 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01085 Cma-Chr1:7990270 Cma02g01096 Cma-Chr2:6522935 1.25E-64 dispersed
Cma02g01096 Cma-Chr2:6522935 Cma02g01404 Cma-Chr2:8128944 0 dispersed
Cma16g00080 Cma-Chr16:351159 Cma02g01096 Cma-Chr2:6522935 0 wgd
Cma18g01292 Cma-Chr18:9958632 Cma02g01096 Cma-Chr2:6522935 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68360 PF00069 Pkinase 3.00E-31 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01096 - - csv:101219980 1009.59