Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01097 ATGGCTTATGATTACAGAAACAAGCCCGGCTACTACAACGCTCATCCTCCGATGTACGGACCGGCTGCTTCATCCTCACCATCTCCTTCAATTCATCCCATGTATACACAGTCCATGTACCCGAGGATCGGTCAGCAAGGTCATTCACCGGCGCCTCCGGTGCCTCGAGTCTCCTCCCACCATCATTCTTCTTCTGCTGCTCCTTCTCCATCTTCTCCCTCCTCTTCAGGATTGGGCATCCGGGTTACCATTAAACCGGAATATCGAATTACTCCTCCGCCTCAATTATCGCCACAAGTTGGAGATATTCCTCGGAGCAATTTCCAATTTGATTTTGAGTTTGAGAAAAAGGTTTTAGCTGAAGCAGAGAAAGAAACTCCGAATTGGAATCGGTTTGGGTTGGAACACCCTCCTTCTAGACCAGTAGAGTCGTCATCTTCAATGGGTTCTCCAGGAGATCCAGTTGTGAACAAGTATGTTGCATCTGGCTTGAGTCGGGAAGCAGTTTCACTTGCAGTTGCTAATTATGGAGACAATCCAACCAAGGTTCAAGAATTTGTGAAAGGCTACACACTCCTACGAGAGATGGGATTTCCATCCAACAAAGTGGTCGAGGCATTACTCATGTATGACAACGACACTGATAAAGCTGTAGCTCACTTTCTTGGCGGTACGTCATAA 681 47.14 MAYDYRNKPGYYNAHPPMYGPAASSSPSPSIHPMYTQSMYPRIGQQGHSPAPPVPRVSSHHHSSSAAPSPSSPSSSGLGIRVTIKPEYRITPPPQLSPQVGDIPRSNFQFDFEFEKKVLAEAEKETPNWNRFGLEHPPSRPVESSSSMGSPGDPVVNKYVASGLSREAVSLAVANYGDNPTKVQEFVKGYTLLREMGFPSNKVVEALLMYDNDTDKAVAHFLGGTS 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6529041 6531776 + CmaCh02G010970.1 Cma02g01097 288848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01097 226 MobiDBLite consensus disorder prediction 58 79 - -
Cma02g01097 226 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 182 224 IPR015940 -
Cma02g01097 226 MobiDBLite consensus disorder prediction 1 79 - -
Cma02g01097 226 MobiDBLite consensus disorder prediction 129 151 - -
Cma02g01097 226 PANTHER LD44032P 1 224 IPR038870 GO:0000813|GO:0043130|GO:0043162
Cma02g01097 226 PANTHER - 1 224 - -
Cma02g01097 226 Gene3D UBAP1 SOUBA domain 148 224 IPR042575 -
Cma02g01097 226 CDD UBA2_UBAP1_like 186 222 - -
Cma02g01097 226 SUPERFAMILY UBA-like 182 224 IPR009060 GO:0005515
Cma02g01097 226 MobiDBLite consensus disorder prediction 24 44 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01097 - - - bhj:120067367 347.436
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g861 . . . . . . . . . . Cma02g01097 . . . . Cpe05g00619 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe12g00363 . . . . . . . . . . . Bhi12g00596 . . Lac11g0121 Hepe06g0760 . Lcy12g0100 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012463 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01097 Cma_Chr02 FPKM 24.396826 25.221203 30.777792 35.148716 16.776579 12.820208 15.993328 26.005234 25.237535 28.843992