Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma02g01103 | ATGTTGAGGGTTTTTTCATTTTTCGGAACATGGAAGCACAATCGTTGGAAAGCTTGCTTGAAGCTATTCCCATCTTCTTGTAAAAGTTTACATACTGAGAACTCCAAAATTGTTTCTACGAATATTTGTATAAGTCGTCATGTAAGAAATGGTCATCTTGATCTTGCTCAAACTCTGTTCGATGAAATGCCAATAAGAAGCGTTGTCTCATGGAATATCATGATTTCTGGATACTCCAAAGTAGGACAGTATAGTGAAGCTCTCGAGCTGGCTTCAGGAATGCATTGCAGTAATGTAAAATTAAATGAGAAGACTTTTTCTACTTTGCTGAGTATTTGTGCACATTCAGGGTGTACACATGAGGGAAAACAATATCATTGTTTGGTTTTGAAATCTGGGTTGCAGATTTTTGAGCTTGTGGGAAGTGCATTGTTGTATTTCTATGCGAACACCAATGACATTAATGGAGCTAAGCTGGTTTTCGATGAGTTGCATGATAAGAATGATTTGTTATGGAGCTTGATGCTTGTAGGGTATGTGAAATGCAATTTGATGGATGATGCTTTTGATCTGTTTAGAAAAATACCTACTCGGGATGTGGTGGTGTGGACTACTTTGATATCAGGGTATGCCAGAAGTGAGCACAACTGCAGAAGGGCATTGGAATTATTCTGCTCCATGTTGACAAATGGTGAGGTCGAGCCTAATGAGTTCACTTTTGATTGCGTTGTGAGAGCTTGTGGGAGACTAAGATATTTGAGACAGGGGAAGGTTGTTCATGGGATTTTAACTAAATATGGATTCCACTTCGATCATTCAATTTGTGGTGCACTGATTTTATTTTACTGTCAGTGTGAAGCTGTTGACATTGCCAAGACAGTTTATGATGGTATGGAGAGACCGTGTTTAAATGCTTCAAATGCTCTTCTGGAGGGGCTGTTATTAGTGGGAAGAATCAATGATGCTGAGGAAATTTTTGTCAAATTAAGAGAAAAGAATCCAGTTTCATACAATTTGATGCTTAAAGGGTATGCAATTAGTGGTAGGATTGAAGAATCAAAGAAATTATTTGAAAAAATGACTCATAAAACTCTAATTTCATCGAACACTATGATAACTGTGTATTCTAGGAATGGTGAAATTGAAAAAGCTATGAAATTATTTGAGTCAACGAAAGGTGAGGGAAATCCTGTGACATGGAATTCAATGATATCAGGCTATATTCAAAATCATCAGCATGAAGAAGCTTTGAGACTCTATCAAACCATGTGCAAAACATCAGTTGAGCGTTCTAGATCAACATTCTCTGTTCTGCTTCAAGCATGCACATGCCTAGGAACTATTCTATTGGGTCGATCACTCCATGGCCATGCAATCAAGACAGCCTTTGACTCTAATGTTTATGTCGGAACATCTCTCATAGATATGTACTCAAAATGTGGGAGTGTCTATGATGCTAAAATCTCGTTCGCCAGTGTTTATTCCCCTAATGTAGCAGCTTATACCGCTCTAATTAATGGATATGTGCAGCATGGGCTTGGAGGTGAAGCATTCTTAGTCTTTGAGAACATGTTAAAGAACAAAATTGTGCCAAATGCAGCTACACTTCTGGGGATTCTTTCTGCATGTAGTCGTGCTGGTATGGTCAATGAAGGAATGAAAATTTTCCACTCTATGGAAAAATGTTATGGTGTGATTCCAACTTTAGAACACTACGCATGTGTGGTGGATCTTCTTGGTCGGTCGGGACATCTGTATGAAGCTGAAGAGCTTATCAGAAACATGCCAATTGAAGCTGATGGGGTTATTTGGGGAGCTCTGCTAAATGCTTGTTGGTTTTGGATGGACTTGGAATTGGGCGAGAGTGTGGCTAAGAAGATGCTTTGTTTGGACCCCAAAGCAATTTCTGCTTATGTTATTCTGTCTAATATATATGCTATATTAGGGAAGTGGGTAGAGAAGATCCATGTGAGGAGGCGATTGAGGAGCTTAAAAGTGAAAAAGGATCGTGGTTGTAGTTGGATCGATGTAAATAATAGAATTCATGTTTTCTCTGTAGGAGATAGGTCCCATCCTAACTGTAATGCTATTTATGCAACGTTGGAGCACATATTAGCACATGTAAACTCTATAGTTCAATTTGACCATGTTCCCAGATCAGTTTCGGAGGTTTCTTTTCCAAATCCAATACACCACTTCCTTTGA | 2205 | 38.73 | MLRVFSFFGTWKHNRWKACLKLFPSSCKSLHTENSKIVSTNICISRHVRNGHLDLAQTLFDEMPIRSVVSWNIMISGYSKVGQYSEALELASGMHCSNVKLNEKTFSTLLSICAHSGCTHEGKQYHCLVLKSGLQIFELVGSALLYFYANTNDINGAKLVFDELHDKNDLLWSLMLVGYVKCNLMDDAFDLFRKIPTRDVVVWTTLISGYARSEHNCRRALELFCSMLTNGEVEPNEFTFDCVVRACGRLRYLRQGKVVHGILTKYGFHFDHSICGALILFYCQCEAVDIAKTVYDGMERPCLNASNALLEGLLLVGRINDAEEIFVKLREKNPVSYNLMLKGYAISGRIEESKKLFEKMTHKTLISSNTMITVYSRNGEIEKAMKLFESTKGEGNPVTWNSMISGYIQNHQHEEALRLYQTMCKTSVERSRSTFSVLLQACTCLGTILLGRSLHGHAIKTAFDSNVYVGTSLIDMYSKCGSVYDAKISFASVYSPNVAAYTALINGYVQHGLGGEAFLVFENMLKNKIVPNAATLLGILSACSRAGMVNEGMKIFHSMEKCYGVIPTLEHYACVVDLLGRSGHLYEAEELIRNMPIEADGVIWGALLNACWFWMDLELGESVAKKMLCLDPKAISAYVILSNIYAILGKWVEKIHVRRRLRSLKVKKDRGCSWIDVNNRIHVFSVGDRSHPNCNAIYATLEHILAHVNSIVQFDHVPRSVSEVSFPNPIHHFL | 734 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 6552565 | 6554769 | - | CmaCh02G011030.1 | Cma02g01103 | 288854 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma02g01103 | 734 | PANTHER | - | 34 | 194 | - | - | |
| Cma02g01103 | 734 | PANTHER | - | 363 | 508 | - | - | |
| Cma02g01103 | 734 | PANTHER | - | 473 | 709 | - | - | |
| Cma02g01103 | 734 | PANTHER | - | 179 | 332 | - | - | |
| Cma02g01103 | 734 | PANTHER | - | 317 | 364 | - | - | |
| Cma02g01103 | 734 | PANTHER | - | 342 | 392 | - | - | |
| Cma02g01103 | 734 | Gene3D | Tetratricopeptide repeat domain | 494 | 716 | IPR011990 | GO:0005515 | |
| Cma02g01103 | 734 | Gene3D | Tetratricopeptide repeat domain | 347 | 449 | IPR011990 | GO:0005515 | |
| Cma02g01103 | 734 | Gene3D | Tetratricopeptide repeat domain | 9 | 127 | IPR011990 | GO:0005515 | |
| Cma02g01103 | 734 | Gene3D | Tetratricopeptide repeat domain | 254 | 345 | IPR011990 | GO:0005515 | |
| Cma02g01103 | 734 | Gene3D | Tetratricopeptide repeat domain | 128 | 253 | IPR011990 | GO:0005515 | |
| Cma02g01103 | 734 | SUPERFAMILY | HCP-like | 297 | 431 | - | - | |
| Cma02g01103 | 734 | Pfam | E motif | 616 | 676 | IPR046848 | - | |
| Cma02g01103 | 734 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 333 | 367 | IPR002885 | - | |
| Cma02g01103 | 734 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 497 | 531 | IPR002885 | - | |
| Cma02g01103 | 734 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 396 | 430 | IPR002885 | - | |
| Cma02g01103 | 734 | TIGRFAM | PPR: pentatricopeptide repeat domain | 369 | 390 | IPR002885 | - | |
| Cma02g01103 | 734 | TIGRFAM | PPR: pentatricopeptide repeat domain | 539 | 568 | IPR002885 | - | |
| Cma02g01103 | 734 | TIGRFAM | PPR: pentatricopeptide repeat domain | 335 | 361 | IPR002885 | - | |
| Cma02g01103 | 734 | TIGRFAM | PPR: pentatricopeptide repeat domain | 69 | 103 | IPR002885 | - | |
| Cma02g01103 | 734 | TIGRFAM | PPR: pentatricopeptide repeat domain | 398 | 429 | IPR002885 | - | |
| Cma02g01103 | 734 | TIGRFAM | PPR: pentatricopeptide repeat domain | 500 | 533 | IPR002885 | - | |
| Cma02g01103 | 734 | PANTHER | BNACNNG15330D PROTEIN | 342 | 392 | - | - | |
| Cma02g01103 | 734 | PANTHER | BNACNNG15330D PROTEIN | 363 | 508 | - | - | |
| Cma02g01103 | 734 | PANTHER | BNACNNG15330D PROTEIN | 34 | 194 | - | - | |
| Cma02g01103 | 734 | PANTHER | BNACNNG15330D PROTEIN | 317 | 364 | - | - | |
| Cma02g01103 | 734 | PANTHER | BNACNNG15330D PROTEIN | 179 | 332 | - | - | |
| Cma02g01103 | 734 | PANTHER | BNACNNG15330D PROTEIN | 473 | 709 | - | - | |
| Cma02g01103 | 734 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 67 | 101 | IPR002885 | - | |
| Cma02g01103 | 734 | Pfam | PPR repeat | 335 | 361 | IPR002885 | - | |
| Cma02g01103 | 734 | Pfam | PPR repeat | 367 | 395 | IPR002885 | - | |
| Cma02g01103 | 734 | Pfam | PPR repeat | 38 | 64 | IPR002885 | - | |
| Cma02g01103 | 734 | Pfam | PPR repeat family | 198 | 247 | IPR002885 | - | |
| Cma02g01103 | 734 | Pfam | PPR repeat family | 67 | 114 | IPR002885 | - | |
| Cma02g01103 | 734 | Pfam | PPR repeat family | 496 | 544 | IPR002885 | - | |
| Cma02g01103 | 734 | Pfam | PPR repeat family | 396 | 442 | IPR002885 | - | |
| Cma02g01103 | 734 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 199 | 234 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma02g01103 | - | - | - | cmax:111490947 | 1493.79 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma02g01103 | Cma-Chr2:6552565 | Cma11g00305 | Cma-Chr11:1511605 | 1.85E-13 | dispersed | |
| Cma02g01103 | Cma-Chr2:6552565 | Cma07g00774 | Cma-Chr7:3479064 | 2.61E-24 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi16g871 | Blo06g01077 | . | . | . | . | . | . | . | . | . | Cma02g01103 | . | . | . | . | Cpe05g00613 | . | . | . | . | . | . | . | . | Cla01g00059 | . | . | . | . | . | . | . | . | . | . | . | Csa05g00067 | Chy09g01423 | . | . | . | . | Bda15g00777 | . | Bpe12g00374 | . | . | . | Cmo02g01130 | . | . | . | . | . | . | . | Bhi12g00617 | . | . | . | Hepe06g0775 | . | Lcy12g0117 | . | . | . | . | . | . | . | Lsi09g00038 | . | . | Cme09g01966 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0004896 | 1 | 4 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 3 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 3 | 1 | 36 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cma02g01103 | Cma_Chr02 | FPKM | 1.21165 | 1.574479 | 2.704211 | 2.565447 | 2.959087 | 2.986408 | 4.025989 | 3.687313 | 3.854041 | 4.505725 |