Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01109 ATGGAGAAGTCTCGAGGAAGTTTCGTAGAGAAGATTGTGCGGTTTCCGGACCGGAGTTCAGATAAAACTTCAATGGGGTTATATTCTGCGGATAACACTTTAAATGTCGGAATAAATGGGACAAGAGCTGACTTAGTTTCAGAAAAGCCTCACAAAGAATTGGAAACTGGTTCTTACAGGATTAATAGAATTAAGAAAACCTTGAAATCATCTTCTTTCAATAAATTTATGTCCAAAAATTTTGGAACACGAAGACAAGTACTTGATCCACAGGGGCCCTTTCTCCAGAAGTGGAATAAGATATTTGTGTTGTCTTGTGTGATTGCAGTCTCGTTGGATCCTTTGTTCTTTTATGTCCCTGTGATGGACGATGATCAGAAATGTCTTGGGTTGGATAAGAAGATGGAGATTACGGCTAGTGTCTTACGTTCATTCACCGACATATTTTATATATTGCATATTGTTTTGCAATTTCGTACGGGATTTATTGCTCCATCTTCTCGAGTATTTGGAAGAGGTGTTCTAGTTGAAGATGCTTGGGCAATAGCAAAGAGATATCTGTCGTCATACTTTTTGATCGACATTCTTGCAGTCCTCCCACTTCCACAAGTAGTGATCCTGATAATTGTTCCAAACATGAGAGGCTCGAGGTCGTTGAATACCAAGGACTTGCTGAAATTCATTGTTTTCTTCCAATACGTGCCTCGGTTTATTAGAATCTATCCTTTATATAAAGAAGTTACAAGAACATCTGTACTCACTGAAACTGCATGGGCTGGAGCTGCATTTAATCTCTTTCTTTACATGCTGGCAAGTCATGTCTTTGGTGCATTCTGGTACTTGTTTTCAATAGAACGGGAAACTACATGCTGGCAGCAGGCTTGTCACAATATTAGCTGTGATTCTAATACACTATATTGTGATGTGGCTGTCAATCTACGAAATAACTCGTTTTTAAACATTTCATGTCCACTAGTGGATGGAGACGAAGACAAACCTCCTTTTGATTTTGGGATATTTCTTGATGCTCTTAATTCTCGTGTTGTTGAGTCGATGAATTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGAGAAATCTAAGTTCCCTGGGTCAAAATCTCCAAACAAGCACATATGTATGGGAAATTTTGTTTGCTGTTTTCATCTCCATCTCTGGCCTAGTCCTGTTTTCATTTCTCATTGGGAACATGCAGACATATTTGCAATCCACCACTACAAGATTGGAAGAAATGAGGGTTAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGTTTACTCCCTGAGAGCCTCCGGGAGCGAATCAGGAGGTACGAACAGTACAAGTGGCAGGAAACTAGAGGGGTTGATGAAGAGAATCTGGTTCGAAATCTTCCGAAAGATCTCAGAAGGGACATAAAACGCCATCTCTGCTTGTCTCTGCTAATGAGGGTACCGATATTTGAAAAAATGGATGAACAACTGCTGGATGCTATGTGTGACCGTCTCAAGCCAGTACTATACACAGAGGAAAGTTATATCGTTCGGGAAGGAGACCCAGTCGATGAGATGATCTTCATTATGCGTGGCAAGTTATTGTCTGTAACTACAAATGGTGGAAGAACTGGTTTCTTTAATTCTGAACATCTCAAGGCAGGGGATTTCTGTGGAGAAGAGTTACTGACATGGGCTCTGGATCCACATTCCTCATCCAATCTACCAATTTCAACAAGAACTGTTCGAACTCTTTCAGAAGTTGAAGCATTTGCTTTGAAGGCAGATGACTTGAAGTTTGTAGCCTCACAGTTCCGTAGACTTCACAGCAAGCAGCTGCGGCACACTTTCAGGTTTTATTCACAACAATGGAGGACATGGGCAGCGTGTTTTATACAAGCAGCGTGGCGTCGATACAGAAGAAAGAAGCATGAACAGGCTCTGTTGGAAGAAGAGAACAGGTTAAAAGATGCATTGGCCAAGACAGGTGGGAGTTCTCCTAGTTTAGGTGCTACCATCTATGCATCCAGATTTGCAGCTAACATCCTAAGAACGATTCGACGCACAAGCTCACGCAAGGCCAGGATTCCCGAGAGAATACCGCCCATGTTGCTTCAGAAACCAGCAGAGCCCGACTTTACCTCTGAAGAGAATAGTTGA 2160 41.85 MEKSRGSFVEKIVRFPDRSSDKTSMGLYSADNTLNVGINGTRADLVSEKPHKELETGSYRINRIKKTLKSSSFNKFMSKNFGTRRQVLDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVMDDDQKCLGLDKKMEITASVLRSFTDIFYILHIVLQFRTGFIAPSSRVFGRGVLVEDAWAIAKRYLSSYFLIDILAVLPLPQVVILIIVPNMRGSRSLNTKDLLKFIVFFQYVPRFIRIYPLYKEVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWQQACHNISCDSNTLYCDVAVNLRNNSFLNISCPLVDGDEDKPPFDFGIFLDALNSRVVESMNFPQKFFYCFWWGLRNLSSLGQNLQTSTYVWEILFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVRNLPKDLRRDIKRHLCLSLLMRVPIFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYRRKKHEQALLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTIRRTSSRKARIPERIPPMLLQKPAEPDFTSEENS 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6588999 6594648 + CmaCh02G011090.1 Cma02g01109 288860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01109 719 Pfam Ion transport protein 98 416 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma02g01109 719 SMART cnmp_10 489 620 IPR000595 -
Cma02g01109 719 Coils Coil 641 661 - -
Cma02g01109 719 Gene3D - 99 413 - -
Cma02g01109 719 ProSiteProfiles cAMP/cGMP binding motif profile. 489 573 IPR000595 -
Cma02g01109 719 Gene3D Helix hairpin bin 415 480 - -
Cma02g01109 719 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 10 716 - -
Cma02g01109 719 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 10 716 - -
Cma02g01109 719 Gene3D Jelly Rolls 487 607 IPR014710 -
Cma02g01109 719 Pfam Cyclic nucleotide-binding domain 509 600 IPR000595 -
Cma02g01109 719 CDD CAP_ED 489 620 IPR000595 -
Cma02g01109 719 SUPERFAMILY cAMP-binding domain-like 418 611 IPR018490 -
Cma02g01109 719 SUPERFAMILY Voltage-gated potassium channels 89 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01109 Cma-Chr2:6588999 Cma05g01038 Cma-Chr5:8307756 0 dispersed
Cma06g01056 Cma-Chr6:7115695 Cma02g01109 Cma-Chr2:6588999 1.66E-11 dispersed
Cma18g01306 Cma-Chr18:10038276 Cma02g01109 Cma-Chr2:6588999 1.72E-26 dispersed
Cma18g01307 Cma-Chr18:10042536 Cma02g01109 Cma-Chr2:6588999 0 dispersed
Cma13g01096 Cma-Chr13:8252978 Cma02g01109 Cma-Chr2:6588999 5.23E-142 transposed
Cma14g02105 Cma-Chr14:14540281 Cma02g01109 Cma-Chr2:6588999 0 wgd
Cma16g00064 Cma-Chr16:278135 Cma02g01109 Cma-Chr2:6588999 4.19E-27 wgd
Cma18g01305 Cma-Chr18:10032716 Cma02g01109 Cma-Chr2:6588999 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01109 K05391 - csv:101221781 1332.78