Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01117 ATGAACAACTACAACAAGCTCCACTCCTCCGGCTCCGGCGACACGCCGGCCACCTTCCAAGTTTCTCATACTCCCAATCCACCACATCCTCCGTCCTCCTCCGCCTCACGCCGCCGCACCCGAATCCTCTTTGTCTCCCTTATCTCGATCCTTCTGATCACCGCGTCCGCCGTCTCCGCCGCCGTCCTCATCCATTCCCACAGCTCCCATATCCCCCACAACAAACCCACCCAAGCCATCTCCCACGCCTGCAGCCGGACTCTCTACCCTTCTCTCTGCCGCTCTTCTCTCCTCTCCTTCCCCGGCTCTCTCTCCGCCGACGTCCACCACCTCGTCCATATCTCTCTCAACTTAACCCTCCAACACCTCACCAAAGCCCTCTACGCCTCTTCTCAAATCCCGGTTTTTCAAATCTCCAATAACCCTCTAGCTCACTCTGCTTACCAAGACTGTATCGAGCTTCTAAACGACGCCGTTGACGCCTTCTCTCTCTCTCTCTTCTCCACCTCAGCTTCTAACCATGACATCATGACGTGGCTTAGTGCTGCGTTGACTTATCATGACACATGTAGTGATGGATTTGCGGATGTGGATGACCCGGTCAAGGATCAAATGGCGTCGAGGCTGAGTGATTTGTCGGAGATGATTAGTAATTCTTTGGCTATTTTTTCTGGGTATGGTGAGGGGTTGCCGGTGCAGAATAGGCGGCGGCTGATGGAGAGTGATAGGGAGTGGGCGGCGGAGAATGGTGTCGCGGTGGCGGAGGGGGAGTTTCCCGGGTGGGTTAGTGGGAAGGATAGGCGGCTTTTGGCTGCTTCCATTTCGGCCATTCAAGCGGATATTGTTGTTGCAAAGGATGGGAGTGGGAAGTTCAAGACGGTGGCGGAGGCCATTGAGGCGGCACCGTCGTCTAGTGGTCGACGAATCGTTATCTACATTAAGGCTGGAAAGTACGAAGAAGAGAATTTGAAGGTGGGAAGGAAGAAGACAAACTTGATGTTTGTGGGAGATGGGAAGGGTATAACCGTCATTTCAGGTGGCAAAAGCGTTTTTGACAAAGTTACTACTTTTCGCACCGCCACCTTTGCCGGTTCTGGGACAGGAATAATTTTACGAGACATGACAATCGAGAACACTGCGGGGCCAAGCAAGCACCAAGCAGTGGCACTTCGTGTAAGTGCAGACCATGCGGTGGTGTATCGTTGCAACATAATTGGTTACCAAGACACTTTGTACGTGCATTCGAATCGACAGTTTTTTCGAGAGTGTGACATATATGGTACAGTGGACTTTATTTTCGGAAATGCAGTAGTGGTGTTTCAAAGCTGCAATATCTATGCTCGGAAGCCTATGCCCCAACAAAAGAACACTATCACTGCTCAAAACCGAAAGGATCCGAATCAGAATACTGGAATCTCCATCCATGCCTGCAAGATCCTCGCTACCACTGACCTTGAAGCCTCCAAAGGCTCTTTTTCGACTTTCCTCGGTCGCCCTTGGAAATTATACTCTAGAGTTGTTTACATGGTATCTTCAATGGGGGATCACATTCATCCACGTGGTTGGCTCGAGTGGCAAGGCTCTTTTGCTCTCGACACTCTTTATTACGGCGAGTATATGAATTCTGGGCCAGGAGCTGCCACAGGGCAGCGAGTCAACTGGCCAGGTTATCGGGTCATTACTTCTACGATTGAAGCCACCAAATTTACTGTCGGACAATTTATCTATGGCTCTTCGTGGTTGCCTTCCACTGGAGTGTCGTTTTCTGCTGGATTATCTGGTAACTAA 1788 50.95 MNNYNKLHSSGSGDTPATFQVSHTPNPPHPPSSSASRRRTRILFVSLISILLITASAVSAAVLIHSHSSHIPHNKPTQAISHACSRTLYPSLCRSSLLSFPGSLSADVHHLVHISLNLTLQHLTKALYASSQIPVFQISNNPLAHSAYQDCIELLNDAVDAFSLSLFSTSASNHDIMTWLSAALTYHDTCSDGFADVDDPVKDQMASRLSDLSEMISNSLAIFSGYGEGLPVQNRRRLMESDREWAAENGVAVAEGEFPGWVSGKDRRLLAASISAIQADIVVAKDGSGKFKTVAEAIEAAPSSSGRRIVIYIKAGKYEEENLKVGRKKTNLMFVGDGKGITVISGGKSVFDKVTTFRTATFAGSGTGIILRDMTIENTAGPSKHQAVALRVSADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAVVVFQSCNIYARKPMPQQKNTITAQNRKDPNQNTGISIHACKILATTDLEASKGSFSTFLGRPWKLYSRVVYMVSSMGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPGAATGQRVNWPGYRVITSTIEATKFTVGQFIYGSSWLPSTGVSFSAGLSGN 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6634770 6637841 + CmaCh02G011170.1 Cma02g01117 288868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01117 595 TIGRFAM PME_inhib: pectinesterase inhibitor domain 60 224 IPR006501 GO:0004857
Cma02g01117 595 MobiDBLite consensus disorder prediction 1 37 - -
Cma02g01117 595 ProSitePatterns Pectinesterase signature 2. 425 434 IPR033131 -
Cma02g01117 595 CDD PMEI-like_3 83 226 - -
Cma02g01117 595 Gene3D Invertase/pectin methylesterase inhibitor family protein 77 225 IPR035513 -
Cma02g01117 595 PANTHER PECTINESTERASE 38 592 - -
Cma02g01117 595 Pfam Pectinesterase 280 577 IPR000070 GO:0030599|GO:0042545
Cma02g01117 595 PANTHER PECTINESTERASE 38 592 - -
Cma02g01117 595 Pfam Plant invertase/pectin methylesterase inhibitor 79 222 IPR006501 GO:0004857
Cma02g01117 595 MobiDBLite consensus disorder prediction 1 22 - -
Cma02g01117 595 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 224 IPR035513 -
Cma02g01117 595 Gene3D - 273 592 IPR012334 -
Cma02g01117 595 SUPERFAMILY Pectin lyase-like 274 591 IPR011050 -
Cma02g01117 595 SMART PMEI_2 75 222 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01117 Cma16g00050 CCT
Cma02g01117 Cma18g01316 CCT
Cma02g01117 Cma15g01025 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01117 Cma-Chr2:6634770 Cma17g01067 Cma-Chr17:7630092 1.42E-176 dispersed
Cma14g01967 Cma-Chr14:13840381 Cma02g01117 Cma-Chr2:6634770 9.06E-144 dispersed
Cma19g00775 Cma-Chr19:7593577 Cma02g01117 Cma-Chr2:6634770 3.83E-15 transposed
Cma15g01025 Cma-Chr15:6364490 Cma02g01117 Cma-Chr2:6634770 0 wgd
Cma16g00050 Cma-Chr16:219206 Cma02g01117 Cma-Chr2:6634770 0 wgd
Cma18g01316 Cma-Chr18:10105679 Cma02g01117 Cma-Chr2:6634770 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01117 - - csv:101216816 946.421