Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01123 ATGGCGGCTTTCCTTCTTCTCTCTTCTCCTTCTTTCACCTACCACAGGATGAGCGAAATCTGTCTTTGCATGCAGTCCTTGCAGTTGCAAAAGGGCATCACATGCTCCTCAGTTAGCCTTCAAAAACAGAAATGTAATATCAAGCTTTATGCAGTACCTGTTAGAGCCTTTTCTTGTCGATTTGCTTCGACTGGTTCTGCTTCTAGTAGAGATGATTTGGGCAGTCAGAGGAAACATATTGCTTCTGCCTTCACTGTTCCAAATGGGTATCAGAGGGCTGGTCACATGCACTACCGTACTGATGGGAACAGCGCGAGTGAATTTGAGGGTCAGTTGGACGAATTATTCAACGAAGTCAGAATGCTGATTGTTAGCAGAAGGAAGAGTGATGCTGTTGAGCTACTTCAAGCAAATTATGAAGCTGTAAAAGAACAGATGGAATCAGGTGCTTGTGGCATTGAACAAGCTGCTGTTCTTGACATCGTGGCTTTGGGGTATATAACTGTTGGAGACTTGAAGTTTGTTGCTTCTATACTGGATATATTGAACAACATTGTTGACAGTCTGAAGGACAACGAACCTTTTCTGGATTCAGTGCTTCTGCATATGGGGAGCATGTACTCAACTTTAAAAAAGTTAGACAAATCAGTGTCTGCATACAAGAGGGCTATTGACATCATAGAGAAGAAAAGTGGAAAAGACAGTAGCTTTCTCATCACTCCAATTTTAGGGATGGCAAAAGTTCTTGGTACCAGTGGAAAAACTACAAAAGCAGTAGAGTTTTACCATCGTGCAATTTCAATTTTGGAATCAATCAGAGGCTTTGAGGACGAGGATTTGGTTATACCTTTATTTAGTCTGGGCAACCTTTTGCTCAAAGAAGGAAAAGGCAAGGATGCCGAAACTTGTTTTGCTAGGATTGTGAACATATATAAAAAGTTATATGGAGAGAAAGATGGAAAAGTTGGAATGGCTATGTATTCTCTGGCTAATGCGAAGTGTGCAAGAGGGGAAGCAGACGAAGCTATTACCTTATATAGAAGAGCTTTGCAGATTATAAAGGATTCAAATTATATGGCTTTAGATGACAGCGAGATGGAGAAGATGAGGATTGATTTGGCAGAACTACTACATGCTGTAGGAAGAGGGAAGGAAGGCAGGGAACTTCTGGAAGAGTGCTTGTTGATAAATGAAAAGTCGAAAGGAAAAGACCATCCCAGCTCAGTGAAGCACCTTGTAAACCTTGCAGCTTCTTATTCACGGTCAAAGAATTACGCTGAGGCCGAGCGTTTACTGCGAATCGGATTAGACATTATGGTAAAAGCAGTGGGACCAGATGATCAATCAATTACAAACCCAATGTTGAATCTCGCTGTCACTCTTTACAATCTAAAACGAGACGATGATGCCGAGCAACTTGCACTAGAAGTCTTGCGAATACGGGAAAATGCATTCGGAAAAGATTGTCTTCCTGTTGGTGAAGCTCTAGATTGTCTGGTTTCCATTCAGAGCAGGCTCGGAAAGGACGAAACCGAGCTACTGAAGCTGCTAAAGAGAATTCTAAGAATCCAGGAGAAAGCGTTCGGGTACGAGGCAAAAGAGGTCATTGACACCCTCAAGAAAATAGTATTCTACATGGATAAATTAGGATTGAAAGATGAGAAGTTTCCAGTTCAGAAACGACTGTCCCTGCTTCGAATGAAATTCAAGAACCAGATGCAATACTAA 1728 41.72 MAAFLLLSSPSFTYHRMSEICLCMQSLQLQKGITCSSVSLQKQKCNIKLYAVPVRAFSCRFASTGSASSRDDLGSQRKHIASAFTVPNGYQRAGHMHYRTDGNSASEFEGQLDELFNEVRMLIVSRRKSDAVELLQANYEAVKEQMESGACGIEQAAVLDIVALGYITVGDLKFVASILDILNNIVDSLKDNEPFLDSVLLHMGSMYSTLKKLDKSVSAYKRAIDIIEKKSGKDSSFLITPILGMAKVLGTSGKTTKAVEFYHRAISILESIRGFEDEDLVIPLFSLGNLLLKEGKGKDAETCFARIVNIYKKLYGEKDGKVGMAMYSLANAKCARGEADEAITLYRRALQIIKDSNYMALDDSEMEKMRIDLAELLHAVGRGKEGRELLEECLLINEKSKGKDHPSSVKHLVNLAASYSRSKNYAEAERLLRIGLDIMVKAVGPDDQSITNPMLNLAVTLYNLKRDDDAEQLALEVLRIRENAFGKDCLPVGEALDCLVSIQSRLGKDETELLKLLKRILRIQEKAFGYEAKEVIDTLKKIVFYMDKLGLKDEKFPVQKRLSLLRMKFKNQMQY 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6669200 6674365 - CmaCh02G011230.1 Cma02g01123 288874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01123 575 Gene3D Tetratricopeptide repeat domain 367 574 IPR011990 GO:0005515
Cma02g01123 575 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Cma02g01123 575 Coils Coil 210 230 - -
Cma02g01123 575 Gene3D Tetratricopeptide repeat domain 197 366 IPR011990 GO:0005515
Cma02g01123 575 SMART tpr_5 281 314 IPR019734 GO:0005515
Cma02g01123 575 SMART tpr_5 409 442 IPR019734 GO:0005515
Cma02g01123 575 SMART tpr_5 367 400 IPR019734 GO:0005515
Cma02g01123 575 SMART tpr_5 239 272 IPR019734 GO:0005515
Cma02g01123 575 SMART tpr_5 323 356 IPR019734 GO:0005515
Cma02g01123 575 SMART tpr_5 197 230 IPR019734 GO:0005515
Cma02g01123 575 SMART tpr_5 451 484 IPR019734 GO:0005515
Cma02g01123 575 SUPERFAMILY TPR-like 367 507 IPR011990 GO:0005515
Cma02g01123 575 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 113 553 - -
Cma02g01123 575 Pfam MalT-like TPR region 199 478 IPR041617 -
Cma02g01123 575 SUPERFAMILY TPR-like 199 434 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01123 - - - cmax:111491290 1037.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00337 Cma-Chr1:1653645 Cma02g01123 Cma-Chr2:6669200 2.49E-07 dispersed
Cma02g01123 Cma-Chr2:6669200 Cma11g00097 Cma-Chr11:522626 3.95E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1027 . . . . . . . . . . Cma02g01123 . . . . Cpe05g00595 . . . . . . . . Cla01g00037 Cam01g0035 Cec01g0034 Cco01g0036 Clacu01g0038 Cmu01g0035 Cre09g2471 . . Cone14ag0004 . . Csa05g00043 Chy09g01443 . . . Bda06g00789 . . . . . . Cmo02g01152 . . . . . . . Bhi12g00649 . . Lac11g0164 Hepe06g0796 . Lcy12g0140 . . . . . . . Lsi09g00017 . . Cme09g01990
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009135 1 6 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01123 Cma_Chr02 FPKM 2.395417 1.887954 5.635769 5.416842 10.196114 10.875535 10.248165 8.437284 9.524896 9.976683