Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01133 ATGGGTAGCGTTAGCGAGGATGAAGAATGCCCGTTTTTTGATGCGCCAGATATCAATGTTCCCTCGATATCGGAAGCCAATTTCGATGGTATTGAGGCGGGCTTTGATTCTCGTCCCAGATTTAACAATTGGGTCGATGGGAGTTTGGGTTATGATGTATGGAATCGAAGCCCTATGAGTGTTCATGAGCGTCGAAGTAAGTTTTTGAAATGGATGGGAATGGGATTAGATCGAGCTCCTCTCGCTAATGGGAATTCTCTCACTGTTTGTCTTGATTGGAGAGAAGGGGATGGAGAAAGATGGAGGGATAATTCTGGGGCTGAATCCTCAGAGTTTGAAGATGTGTTTTGCTCGGGTCGATCTTCGTTGTCGTGTTGGTCTAATGATGATCTTGAACATTCAGAGATGGCTTCAAAGAATAGCATTCTGTATAGGGATGGTGGGATTCATGGAGAATGTGGCAGGAAAATTGGGGATCTAAAAAAATCTGTTCGGTTTGCATTGCCTGAAAAGCTCGAGGAGGCATCGAATTCTTCGCCGTCTTTCCAACAAATGATGGAGATGGAGGCTGAGAGGGCGAACATTCCGTTGAGTACAGAACGAAGAGTCAACAAGCGTTGGCTTAAGAAATTACGATCGGCAGCCTGCATTTTCGATAAGCATGGTAAGTCAAGATTGGTAGTTGATGGTGATTTGAGTACAGGGTCGAGAGTTCCGAGGATGAAGGTTCGCCATTGCAAGAAGCAATTGAAAGAACTCTCAGCTATGTATATGGGACAAGATATCCAGGCACATCAAGGTGCTGTTTTGACGATGAAGTTTAGTCCTAGTGGACGGTTTCTCGCTACTGGTGGTGATGATGGGATTGTTAAATTATGGCAAGTGATTGAAGATGAGAGATTGAATGAATCCGACATTCCCGAGATCGATCCATCCTGCATTTACTTCACAGTTAATCACCTTTCTGAGTTGAAACCCCTGCGTTCGGAGAAAGAAAAGATAGCTAACTCGATGGCCTTGAAGAAAACATCAGAATCAGCTTGTATAATTTTTCCACCTAAAATCTTCAGGATATTGGAGCGGCCATTGCACGAGTTCCATGGACATACCGGCGACATTCTGGATCTCTCTTGGTCAAAAAACAATTATCTTCTGTCATCATCAATCGATAAAACTGTCCGACTTTGGCGATTGGGATCTAATGATTGTCTCAGAGTTTTTTCACATAGTAACTACGTTACTTGTGTTCATTTTAATCCCATGGATGAAAATTACTTTATCAGTGGTTCAATAGATGGAAAGATACGCATTTGGGGGATTCCTTCTTCTCAAGTTGTTGACTGGATCGACATTAGGGAAATTGTCACTGCAGTGTCCTATCATCCTAATGGGCGGAGAGGAGTCGTTGGCTCCATAAACGGTACCTGCCGCATCTTTAGAGTAATAGGTGATAATAACCTGGAATTAGATGCCGAAATATGTTTGTCGAGTAAGAAGAAGTCGCCCAGTAAAAAGATAACAGGGTTTCAGTATTCTGCAAACGATTCGAGCAGAATAATGGTCAGCTCTGCTGATTCTCGAATCCGGATTGTTCAAGGGCTTCATGTGATCCAGAAATACAAGGGGCCTTGTAATACCGGAAACCAGATGTCTGCGTCGTTCACCTCAGACGGGAAACATATTATATCGGCTAGTGGCGATTCTAATGTATATGTATGGAACTGCAGTTATAAGAACGAGTCTATTCTTTCCCCGGTGAAGAAGATCAAGTCGTATGAATATTTCCCCTCCAATGGTTCCATTGCAGTACCGTGGTGTGGTTTGATAAGTAACACAGACGACGAAAGACGTTTTTCTGGCACGCGAAGGAGTTCTTCTGACACTTTCCCGCTTTCGTCCCCGGCTTTTTTCTCTTTGAGGCAAGAGTTATTAGAATCCTTCCCCAAGGGATCTGCAACTTGGCCCGAGGAGAAGCTCCACGCTTCGAGCCTACGAATGAAACCATCTATGATGCATAAATCTCGGTATAAATTTCTGAAATTGTCTTGCCAAAATACATCGAGTTCTCACGCATGGGGTCTGGTCATCGTGACTGCAGGATGGGATGGACGAATCAGGTCGTTTCACAACTACGGGTTACCTGTACACCTATCTCTATATATTTTCTTATACTCTAGGGCCAGCTTATTGAAACAACTACGACGAAACAAGCTTCTCTATGGAGGAACAACTTCAAATCAGCTAGTGGCCAAGGTTGCTGCAGGGGCTTGGAGGACCTCATACCTCGCGCCTTTTCTGCTCTAA 2304 43.97 MGSVSEDEECPFFDAPDINVPSISEANFDGIEAGFDSRPRFNNWVDGSLGYDVWNRSPMSVHERRSKFLKWMGMGLDRAPLANGNSLTVCLDWREGDGERWRDNSGAESSEFEDVFCSGRSSLSCWSNDDLEHSEMASKNSILYRDGGIHGECGRKIGDLKKSVRFALPEKLEEASNSSPSFQQMMEMEAERANIPLSTERRVNKRWLKKLRSAACIFDKHGKSRLVVDGDLSTGSRVPRMKVRHCKKQLKELSAMYMGQDIQAHQGAVLTMKFSPSGRFLATGGDDGIVKLWQVIEDERLNESDIPEIDPSCIYFTVNHLSELKPLRSEKEKIANSMALKKTSESACIIFPPKIFRILERPLHEFHGHTGDILDLSWSKNNYLLSSSIDKTVRLWRLGSNDCLRVFSHSNYVTCVHFNPMDENYFISGSIDGKIRIWGIPSSQVVDWIDIREIVTAVSYHPNGRRGVVGSINGTCRIFRVIGDNNLELDAEICLSSKKKSPSKKITGFQYSANDSSRIMVSSADSRIRIVQGLHVIQKYKGPCNTGNQMSASFTSDGKHIISASGDSNVYVWNCSYKNESILSPVKKIKSYEYFPSNGSIAVPWCGLISNTDDERRFSGTRRSSSDTFPLSSPAFFSLRQELLESFPKGSATWPEEKLHASSLRMKPSMMHKSRYKFLKLSCQNTSSSHAWGLVIVTAGWDGRIRSFHNYGLPVHLSLYIFLYSRASLLKQLRRNKLLYGGTTSNQLVAKVAAGAWRTSYLAPFLL 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6698172 6702975 - CmaCh02G011330.1 Cma02g01133 288884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01133 767 ProSiteProfiles Trp-Asp (WD) repeats profile. 406 448 IPR001680 GO:0005515
Cma02g01133 767 Gene3D - 247 603 IPR015943 GO:0005515
Cma02g01133 767 SMART WD40_4 492 532 IPR001680 GO:0005515
Cma02g01133 767 SMART WD40_4 442 480 IPR001680 GO:0005515
Cma02g01133 767 SMART WD40_4 359 397 IPR001680 GO:0005515
Cma02g01133 767 SMART WD40_4 400 439 IPR001680 GO:0005515
Cma02g01133 767 SMART WD40_4 533 574 IPR001680 GO:0005515
Cma02g01133 767 SMART WD40_4 255 294 IPR001680 GO:0005515
Cma02g01133 767 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 303 IPR001680 GO:0005515
Cma02g01133 767 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 5 716 - -
Cma02g01133 767 SUPERFAMILY WD40 repeat-like 261 707 IPR036322 GO:0005515
Cma02g01133 767 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 406 444 - -
Cma02g01133 767 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 295 - -
Cma02g01133 767 PANTHER WD REPEAT DOMAIN 44 5 716 IPR040324 -
Cma02g01133 767 PRINTS G protein beta WD-40 repeat signature 384 398 IPR020472 -
Cma02g01133 767 PRINTS G protein beta WD-40 repeat signature 426 440 IPR020472 -
Cma02g01133 767 PRINTS G protein beta WD-40 repeat signature 281 295 IPR020472 -
Cma02g01133 767 ProSiteProfiles Trp-Asp (WD) repeats profile. 551 574 IPR001680 GO:0005515
Cma02g01133 767 ProSiteProfiles Trp-Asp (WD) repeats profile. 366 406 IPR001680 GO:0005515
Cma02g01133 767 Pfam WD domain, G-beta repeat 402 438 IPR001680 GO:0005515
Cma02g01133 767 Pfam WD domain, G-beta repeat 263 293 IPR001680 GO:0005515
Cma02g01133 767 Pfam WD domain, G-beta repeat 361 396 IPR001680 GO:0005515
Cma02g01133 767 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 366 398 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01133 - - - csv:101206156 1217.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01133 Cma15g01017 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00931 Cma-Chr2:5536316 Cma02g01133 Cma-Chr2:6698172 0 dispersed
Cma02g01133 Cma-Chr2:6698172 Cma15g01305 Cma-Chr15:8225461 0 dispersed
Cma15g01017 Cma-Chr15:6290271 Cma02g01133 Cma-Chr2:6698172 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1012 . Blo15g00080 Bda05g00130 Bda07g01942 Bpe03g00197 Bpe07g01024 Bma10g01307 Bma14g02015 . . Cma02g01133 Cma15g01017 Car02g00936 Car15g00952 . Cpe05g00590 . . . . . . . . Cla01g00031 . Cec01g0028 Cco01g0030 Clacu01g0030 Cmu01g0029 Cre09g2477 Cone1ag0999 Cone5ag0704 . . . . . . Blo07g00327 Blo09g00017 Bda06g00793 Bda15g00789 . Bpe12g00345 Bma08g00392 Bma12g01219 . Cmo02g01161 Cmo15g01081 . . . . . Cpe13g00320 Bhi12g00667 . . . Hepe06g0808 . . . . . . . . . Lsi09g00011 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003050 4 4 3 4 3 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01133 Cma_Chr02 FPKM 8.771116 10.195907 12.072984 11.408208 13.719214 13.539158 15.280773 6.482144 6.881335 7.104195