Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01137 ATGGAGATTTTCTACTTTCTGGTGTTTGGAGCATTGTCTGTAGTGGTTGCAGCTCTGGAGCTCAGCAAATCCAACAAGGACAGGATCAATACGCCCTCCGCTTTCAATGCTTTCAAGAACAATTACCTTTTTGTTTACTCTCTTATGATGGCTGGGGACTGGTTGCAGGGCCCATACGTATACTTCCTTTACAGTCAGTATGGCTTTGATAAAGGAGAGATTGGTCAGCTTTTCATTGCCGGTTTTGGGTCCTCCATGTTGTTTGGTACAATTGTTGGTTCTCTTGCTGACAAACAAGGTCGAAAGAGAGCTTGCATCACTTATTGTATTACGTACATTCTGAGTTGCATCACAAAGCATTCGCCCGAGTACAAGAGGGGCTTTGAACAGCAATGGTTGTCGATTACATTCTCAAAGGCTATATTTCTTGGCAATGGTCTTGTTGCAATTCTTGCTGGGTTGTTTGGGAATGTACTCGTTGATAGTCTTTCTCTTGGACCAGTGGCACCTTTTGATGCTGCTGCCTGCTTTCTTGCAATTGGTATGGCCGTTATTATGTCATCTTGGACGGAGAACTATGGAGATCCATCAGAAAATAAGGATCTGCTCACCCAATTCAGGGGTGCTGCTGTTGCCATTGCTTCTGATGAGAAGATTGCACTGCTGGGTGCTATACAGTCTCTATTTGAAGGTTCAATGTATACCTTTGTATTCCTCTGGACACCTGCACTCAGCCCAAATAATGAGGATATTCCCCATGGATTTATCTTTGCAACATTCATGTTGGCTTCAATGCTCGGAAGTTCCCTTGCATCTAGGTTGATGGCTCGAAACTCACTAAAAGTTGAGAGCTATATGCAGATTGTTTTCGTTGTCTCTTCTGCCGCTCTTGTACTTCCGATTGTGACAAGTATCTTGGTAGCTCCATCAGATGTGAAAGGTGGAAGCATCTCTTTTGCAGGTTGTATCCAGTTGCTTGGCTTCTGTGTTTTTGAGTCCTGCGTTGGTATATTTTGGCCTTCCATAATGAAGATGAGATCCCAATACATTCCTGAGGAGGCTAGAAGCACCATCATGAACTTCTTCCGCATACCTCTCAACATCTTCGTATGCGTGGTGCTGTACAATGTTGATGCTTTCCCCATCACTGTGATGTTTGGCATGTGCTCCATTTTCCTCTTTGTGGCATCGATTTTACAGAGGCGGCTTCTGGCGATCGTGGATAAACCAACTTCCATGGCCGAGTACTCGAACACGACGTATAGCTGTAGAAGTTGCCGCAACCCGCTCGCCTCCGGAGCTGATCTCCTTTCCAAATCCTTCTTGGAGGAGAGGCGTCTTGATCTCAATCTTCTTGATCAATGGCTGAACTATTGGGACCACGTTTATATAGCTGCTGGAAGACATGGGCGTGCTTTTCTGTTCTCTCATGCTATGAACATCACAGTGGGACCAAAAGAAGACCGGCATCTCATGACGGGTCTCCACACTGTTGCTGATGTGCATTGTGTTGACTGCCGTGAGGTGCTGGGGTGGAAGTATGAGAGGGCCTATGAGGCATCACAGAAGTATAAAGAAGGAAAGTTCATTCTTGAAAAATCCAAAATCGTTCGGGACAACTGGTAG 1626 45.33 MEIFYFLVFGALSVVVAALELSKSNKDRINTPSAFNAFKNNYLFVYSLMMAGDWLQGPYVYFLYSQYGFDKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACITYCITYILSCITKHSPEYKRGFEQQWLSITFSKAIFLGNGLVAILAGLFGNVLVDSLSLGPVAPFDAAACFLAIGMAVIMSSWTENYGDPSENKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNNEDIPHGFIFATFMLASMLGSSLASRLMARNSLKVESYMQIVFVVSSAALVLPIVTSILVAPSDVKGGSISFAGCIQLLGFCVFESCVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCSIFLFVASILQRRLLAIVDKPTSMAEYSNTTYSCRSCRNPLASGADLLSKSFLEERRLDLNLLDQWLNYWDHVYIAAGRHGRAFLFSHAMNITVGPKEDRHLMTGLHTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6719919 6727696 - CmaCh02G011370.1 Cma02g01137 288888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01137 541 ProSiteProfiles Yippee domain profile. 419 540 IPR034751 -
Cma02g01137 541 Gene3D MFS general substrate transporter like domains 42 400 IPR036259 -
Cma02g01137 541 Pfam Sugar-tranasporters, 12 TM 125 328 IPR008509 GO:0015098|GO:0015689|GO:0016021
Cma02g01137 541 PANTHER SAM (S-ADENOSYL METHIONINE) TRANSPORTER 124 416 IPR008509 GO:0015098|GO:0015689|GO:0016021
Cma02g01137 541 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 420 536 IPR004910 -
Cma02g01137 541 CDD MFS_MFSD5_like 35 401 - -
Cma02g01137 541 PANTHER MOLYBDATE-ANION TRANSPORTER 1 125 - -
Cma02g01137 541 PANTHER MOLYBDATE-ANION TRANSPORTER 124 416 - -
Cma02g01137 541 SUPERFAMILY MFS general substrate transporter 43 403 IPR036259 -
Cma02g01137 541 PANTHER SAM (S-ADENOSYL METHIONINE) TRANSPORTER 1 125 IPR008509 GO:0015098|GO:0015689|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01137 K24175 MFSD5; MFS transporter, MFS domain-containing protein family, molybdate-anion transporter - csv:101204554 758.444
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01137 Cma-Chr2:6719919 Cma15g00129 Cma-Chr15:601205 5.31E-30 dispersed
Cma07g00072 Cma-Chr7:425932 Cma02g01137 Cma-Chr2:6719919 0 transposed
Cma14g02125 Cma-Chr14:14606487 Cma02g01137 Cma-Chr2:6719919 3.64E-22 wgd
Cma15g01012 Cma-Chr15:6110598 Cma02g01137 Cma-Chr2:6719919 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1005 . . . . . . . Bma14g02018 . . Cma02g01137 . Car02g00940 Car15g00947 . Cpe05g00587 . . . . . . . . . . . . . . . . Cone5ag0709 . . . Csa05g00033 Chy09g01451 . . . . Bda15g00792 . . Bma08g00395 . . Cmo02g01166 . . . . . . Cpe13g00323 Bhi12g00677 . . . Hepe06g0813 . . . . . . . . . Lsi09g00007 . . Cme09g02000
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001828 3 2 3 2 2 2 3 2 2 2 2 2 2 2 2 2 2 3 3 2 2 2 2 2 2 2 2 3 3 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01137 Cma_Chr02 FPKM 30.39831 30.564188 29.685162 31.611021 36.053646 33.749973 39.109871 26.848059 26.493982 28.364933