Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01144 ATGAAGCATCAGCACCTTCCGCCGTTGAATTTTCATCTTCATTTGCCTCACTTCCATCACCGGAGCAAGCCGTACACTCCCAAGGGCTGTTTGGCTGTTCTTGTTGGCCAAGAACAAGAGAGGTTCGTGATTCCTGTCATTTATGTCAATCATCCGCTGTTCGTGCAGCTCTTGAAGGACGCTGAAGATGAGCATGGCTTCGATCAGAAAGGTCCGATCTCAATTCCTTGCCCTGTCGATGATTTCCGTACACTTCAGGGCATTATTCATCATGATAGCTTCATTCATCATCTTCACATCTCTTCTACAACTTTGCTGCACGCGTCTTCTTCATATGTAAACTAA 345 45.8 MKHQHLPPLNFHLHLPHFHHRSKPYTPKGCLAVLVGQEQERFVIPVIYVNHPLFVQLLKDAEDEHGFDQKGPISIPCPVDDFRTLQGIIHHDSFIHHLHISSTTLLHASSSYVN 114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6752352 6752968 + CmaCh02G011440.1 Cma02g01144 288895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01144 114 Pfam Auxin responsive protein 22 85 IPR003676 GO:0009733
Cma02g01144 114 PANTHER SAUR-LIKE AUXIN-RESPONSIVE FAMILY PROTEIN 10 99 - -
Cma02g01144 114 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 10 99 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01144 K14488 SAUR; SAUR family protein - cmos:111459565 138.658
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01144 Cma15g01004 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01144 Cma-Chr2:6752352 Cma08g00134 Cma-Chr8:714736 3.83E-25 dispersed
Cma15g01004 Cma-Chr15:6068472 Cma02g01144 Cma-Chr2:6752352 1.38E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g984 Blo06g01052 . . . . . . . . . Cma02g01144 Cma15g01004 . Car15g00938 . Cpe05g00581 . . . . . . . . Cla01g00017 . . . . . . Cone14ag0451 Cone15ag0481 . Cone18ag0993 . Csa05g00018 Chy09g01463 . . . . Bda15g00796 . Bpe12g00336 Bma08g00398 . . Cmo02g01175 . . . . . . Cpe13g00332 . . . . . . . . . . . . . . . . . Cme09g02014
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014861 0 0 0 0 0 0 1 0 0 0 1 0 2 1 1 1 0 0 2 0 1 2 1 0 0 0 1 2 1 0 17
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01144 Cma_Chr02 FPKM 98.892754 115.150955 14.71365 11.767287 24.14514 25.805275 28.297762 4.541533 4.711596 6.171746