Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01147 ATGAATCATTCTGGTGAAGATGATGTGCTATATGTCAAGGTGCAGCAGGGAAGGGAACCCCTTGATGTTGACTTCTGTTCAATTTCAATTGATGGGAATTCAGATAATGATATTTTGCAGCAACGGCTCAATGATGTCACTAGACAGAGAGAGGATCTGCAACAGATGGAGATTGAACTTAGAGCTCAAGTTATTGCAAGATCAGAAATATTGGAAATGCGAAAGAGGTTTGATGCTCAAGTGAAAGAACATAATAATGCTGCCATCAAGATGCAGGACCAACTATGTGAAAGAGATCAGGCTATTCATGAATTGGAAAGGAAATTAGAAGATAAAGACAGGGAGTTGCAATCAATTAAATTGGACAGTGAAGCGGCTTGGGCCAAGGATGATCTTCTTCGCGAACAAGATAAAGAAATAGCAACTTACAGGAGAGAACTTGATCACTCTGAGGCTGAAAGAGCTCAACAAATAAAACAAATGCATGAACTCCAAGAACACATCCATGAGAAAGAGCGGCAGCTTCTTAAGTTACAGGAGCAGCATAGGATTGCTCAAGAAACCATTTTGTACAAAGATGAACAATTGAGGGAAGCCCATGCTTGGATTGCTCGTGTCCAGGAAATGGATGCTTTGCAATCGACTACAAATCATTCCTTACAAGCCGAATTGTGTGAACGTAAGGAGCAGTATAACCAGCTATGGCTTGGTTGCCAGCGGCAGTTTGCAGAGATGGAAAGGCTTCACATGCATTCGTTGCAACAACTCCAACTCGAGTTGGCTGATGCAAGGGAAAGAAATGGGACTTACAATGAGGAGTCAAATATATCTCAGACAAATTCTAAAGATGTATCGCAATATGGGCAAACTAATAACCAATTAGGTGGAGCTGCTTCAAATGGAAATAATGGGGCACTGTCAAATGGGAATGCTGAAAATGTTCCATCTTTTAATTCGACTGTCAATTCATCTATCCAGAGTGACCATGTATCCGGTGTTCCAATGGCTCCATCATCTCTACTTGGGATGCCACCCTACCTTACTCCTGGGCAGATGGCTGCCTTGCATCCTTTTTTGATCCATCAACCAGGGGTTCCTCATTCTGTACCATCCCCAGTTCCTCAATCTCACATGGCGCATTTCTCATCATTACCAGCTGTATCATCCATCCAACCGTGGCAGACTAAACAGAATGAGCTTCAGTCTTCTCAAAATGCTCAAAACATAATGACATCAAATACTAATTATCCCTACGAGATGACTGCTAATGGGCAAGCTCTTGAACCAGATTATCTGGATGTTCATACCAGCAAGAGAAGAGAACCTGATTCAGTGCTTTCATCATCTTCTGGAGAAACACAGCTTGAGTCAGTGGATAGAGGATATCAAGTGGCCCCCCAACCTGATACGAGCTTGCAACATGTTGCCTCTCAATTTCATGATGCTCTAAGGATTGGTTCTGCTTCTATTCAACACAACAATGAAAAGGATCAAATTGATTTGTGTGCAGGTGGTCAAGTTCTGGAGAAGCAAGGGTTAGATGGGGGAAAATTAAGTCCTGCTATCAGTACGTTAACCTCTGATTCTTCTCCCATTCACAATGTAAACATCAGTGAAGTGGTTATCAACAATGCCTCTGGATCTGGGGCTGTTGTATCTGAAGCTTTTGTTTCTTCTGGGCCGAAAATTCCTATAATGGTGGAGAAGGCCTCAGAAACCGCCCTTCTTGATGAAAGAGCATTATTAGCTTGTATTGTTCGAACTATTCCAGCCGGTGGTAGAATTCAAATAAGTTTAACACTACCAAACAGGCTATGCAAGATGCTTGCACCTTTACACTGGCATGATTATGCGAAGAAGTATGGTAAGCTTGAAGACTTCGTAGCTGATCATCCTGAATTATTTGTGATTGAGGGCGATTATATTCAGCTTCGAGAAGGAGCACAGAAGACAATAGCAGCTACAGCAGCTTTTGCTAAGGTTGCCGCTGCGGCTGCAGCTTCATCTCATTATTCATCATATTTGCCTTCTGTTGCTATGACCCCAATGGCACATACTAATCGGTCAAAGAGGATTATATCTACTGATTCAAAAAACATGAAAGCCGAGAAGACTTCTGTTCTTACTACAAATATGGCTAAGGATTCTCCACAGGGCACACTAATGAAGAATCAACCTAAAAATGGTTTTCATTCGGCCGCCGGTGGAGGTCTATTGAATGTGAAACTTTTTACTAGATCAAAGGATAGTCGTGAACTGAATGTCTCAGAAGCCAAGCCTCGTGAATCATCTATGTTTTTGGAGTTTGAAAATGGGGCTGCTCATGATAGAACATCAAGCGGGAGCAATGAAAGCTTACCTTCAACTGATGGGAGGTCTAGTGTCAATTTTTCTGGGAAACATCAGGGCAGGATGGCTGCTGCTTCGTTTCCTTCAAGAAGATATTCATACTTGTTCGCTGTGGTGTCGTTTTTGGCTTTCTTATCTATACTTTATAGAAAAGAATACGGGAGGGAACAGGAACGAAGCAGAAGGGCGTGGGTGATAGAGATGGGTTATATCCTGCGAGTGAGATTGGCTTCCTTCTTCGCCGGAGCAGCGGTTGCATCGTCTCTGGGGTTTTACATTCTTCAAAGAGATTACAAGATTGCTTACGATTCCATTTCGCAAAAGATGGGAGGGCTGCATGATTCTCTGGAGAGTAGAATTTCAGCACTGGAAAAACTGAACCAGAATTTAGGTTTGTTCCATGCTGGTAGCTATGCTGCTGTGATGTTACCCTGCTCATGTAAGACTTGGATAATCGCGTATTTGGAAATTACCTCCTTCAGTCTCGCGCCTGTGGCTGTGGCTGTGGCATGTTATCCTCTGCCACGACCTAACCCTAAACCCTTCGTCATCAATTCCGGTTGCTGCAGGAGGATCTCCAGCACGGAAGCCAAGCGCCAGTTCTTCTTTGAGTCCCTGCTGAGCCTCGGTACCAGGTTTTGGTGCAGTCTAGTTCGTCAGTTTCCCAGTCTTTGGGATGCAGAAGATGCAATTCGAGGTCGTGATGGATATAATTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCATCAAGTGATCATCGTAGCAATTATGGTGGCAGTGGTGGTGGTGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTGATTGTACGGGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCATGACAGCGAAGGGACATTTGGGACTGTTGATTATACAAACTATGACGACATGAAGTATGCTATTCGAAAACTTGACGATACAGAATTCAAAAATCCTTGGGCAAGAGCATACATTCGGGTGAAAAAGTATGAAGGCAGTCCCACTAGGGGTCGGAGCAGAAACAGAAGCAGAAGCCGTAGTAGGAGCCGGAGCCGGAGCCGAAGCCGAAGCCGAAGCCGAAGTGCGAAGCGAAATAGGAGCAAATCAGCCGAACAATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCTATCCCCTGTTAAATCTTCAAGACGACGTTCAAAATCAAGATCTGGATCACCACGTGAGCGCCCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACTTCTACTTCTTCCTCCTCGGTTAATTTCTCCCTCTTTTTCTGCTCCTTCTCCTTCGTTTCTGATCACGCCGCCGCCTTCGACGACTGTGAAATGGCTGAGGCCGTGGTGGCGACTTCTGAGGATGTGGATTTTGGTTATGCGACGGCCGAGATCGAGAACAACAGAGAAAGCAGTTCAAATGGACTTGGGATTGGGATCAAGTGGGAGTGCCTTTTGCCCAAGGTCATGCTCAGGGTCCTGCTCGTTGAAGCGGACGATTCCACCAGACAGATTATCACTGCTCTTCTCCGCAAGTCCTGCTACCGAGTTGCTGCTGTTCCTGATGGCATGAAAGCGTGGGAGATTCTCAAAGCAAGGCCCCGTAATGTAGATCTTATATTGGCGGAAGTTGAATTACCATCAATGTCTGGATTTTCTCTGCTAACTCTGATCATGGGGCACGAGACTTGCAAAAATATTCCTGTTATAATGATGTCATCCGAAGATTCTATCAGCACCGTTTATAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTTAAGCCCTTAAGGAGAAATGAACTGAGTCATCTGTGGCAACATGTTTGGAGAAGACAAGCATCATCAAATGTAAGCTCTGACATTCAAGAAAAGGTTGAAGTCACTTCAGAAAATGAGACTGCAAGCAACCACTCCACTGATTATGCTGCTGGAGTTGAGAGGAATGACAACAACACTGAGAAAGGGAGTGATACTCAGAGCTCTTCTACAAAGGTAGATTTTGAGGCTGGTAGTAAGATGCAGGAAAGTTCACAGCCGAGGCAGGAAAAATCCTCTTCAAATGACTTCAAGCTACAGAAAGATGGGGGTCACATCAATTTGAGTCAGAGATTGGCTATGCATGAAAATGAATCTGGAGGATTGGCAATGAGTTGCTATGCTAATGATGATTTACCAATTACACTAAGCATGGGTCTTGAGCCGACCAATGATGGGAGAAGTCCTTATATTGCTAGTGAAGCAGAGGGTTTGCTTGCCATCCCATCTAGAGATGCAACTGCGTTGAATCATGCCTGTATCAATTATCCCGATGACTACCAAAGAAGATCTCCTTCCGCTGTTGCTACCACAAAAAATTTCGGCTCTGCTCTTCATTTGGATCTTTCCCTAAGAAGATGTCAACCTAATGATTTTGAGGACCGTGCTGCAGACGGACGAGCTACCCTCAAACATTCCAGTGCTTCAGCTTTTACAAGATACACTTCCAGGCCATTGCAAACACTTCAAGCAAAATCAAGCAGTATCTGTGATGAACAAAAAGAATTTGGAAGCAATCCCGAGCATACTGGAAGTATTGCTGCTACTCCTACCTCTGATACCATTAATACTACGCTAAGTCTGCAAAACAGTAATACTTCTATGCCCCTGATGACAAGTCTATCTGCTCTCTCTGAAGTTGCAAAATCAAGTACTTCAGAGACAGAAATCCCTCATCAAGTTACAGTGAAAGATTTGATGTCTAATAGTCAATGCTCGGGCCATGGCTCTTTACTTTCTCCCAACTTGTGCACACAAGGGGGTGCGTCATCGTCTCCATGCTCAACTTTAGTCACTCATCCCGAACCCATCTTGGCAAAACAGACAGTTTATCCCCTAAACCTTGAGAATCATAATTTGGAGCAGTTTCTGAACCAGCATCCCAACATAAGTGATCCAGGAAGCCGAAAGTTAGAGAACTCAGGGCAGAAGTTGGAGTATGCAGAAAATCAAGGCCATATATCACCTACCACTGATCACAGTGCAAACAGTAGTCTATGTGGTGGTAATACAAGTCATGTTCGAAGCGTGGGATATCCTAGCACATGCGGAAGCAACAACAATGTCAACCGGGTTGGCATTGCTGCAAGGGTTACATCTGAGAGCAAAAATGAAGAAGCTTTGTCTTATCAAGGAGGAGATCCTCACTGGAGCAGTCAAAGAGAAGCAGCTCTAACAAAGTTCCGACTGAAGCGAAAAGATCGATGTTATGATAAAAAGGTGCGTTATGAGAGCAGGAAAAAGCTGGCAGAACAGCGTCCTAGAGTGAAGGGTCAGTTTGTCCGTAGAGTATACACCGATGATCCATTGCCTGCAGAAAGCAACGCCAATACATCCAACGGTTAG 5826 44.16 MNHSGEDDVLYVKVQQGREPLDVDFCSISIDGNSDNDILQQRLNDVTRQREDLQQMEIELRAQVIARSEILEMRKRFDAQVKEHNNAAIKMQDQLCERDQAIHELERKLEDKDRELQSIKLDSEAAWAKDDLLREQDKEIATYRRELDHSEAERAQQIKQMHELQEHIHEKERQLLKLQEQHRIAQETILYKDEQLREAHAWIARVQEMDALQSTTNHSLQAELCERKEQYNQLWLGCQRQFAEMERLHMHSLQQLQLELADARERNGTYNEESNISQTNSKDVSQYGQTNNQLGGAASNGNNGALSNGNAENVPSFNSTVNSSIQSDHVSGVPMAPSSLLGMPPYLTPGQMAALHPFLIHQPGVPHSVPSPVPQSHMAHFSSLPAVSSIQPWQTKQNELQSSQNAQNIMTSNTNYPYEMTANGQALEPDYLDVHTSKRREPDSVLSSSSGETQLESVDRGYQVAPQPDTSLQHVASQFHDALRIGSASIQHNNEKDQIDLCAGGQVLEKQGLDGGKLSPAISTLTSDSSPIHNVNISEVVINNASGSGAVVSEAFVSSGPKIPIMVEKASETALLDERALLACIVRTIPAGGRIQISLTLPNRLCKMLAPLHWHDYAKKYGKLEDFVADHPELFVIEGDYIQLREGAQKTIAATAAFAKVAAAAAASSHYSSYLPSVAMTPMAHTNRSKRIISTDSKNMKAEKTSVLTTNMAKDSPQGTLMKNQPKNGFHSAAGGGLLNVKLFTRSKDSRELNVSEAKPRESSMFLEFENGAAHDRTSSGSNESLPSTDGRSSVNFSGKHQGRMAAASFPSRRYSYLFAVVSFLAFLSILYRKEYGREQERSRRAWVIEMGYILRVRLASFFAGAAVASSLGFYILQRDYKIAYDSISQKMGGLHDSLESRISALEKLNQNLGLFHAGSYAAVMLPCSCKTWIIAYLEITSFSLAPVAVAVACYPLPRPNPKPFVINSGCCRRISSTEAKRQFFFESLLSLGTRFWCSLVRQFPSLWDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSRSAKRNRSKSAEQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPRERPFSSSSSSSSSSTSTSSSSVNFSLFFCSFSFVSDHAAAFDDCEMAEAVVATSEDVDFGYATAEIENNRESSSNGLGIGIKWECLLPKVMLRVLLVEADDSTRQIITALLRKSCYRVAAVPDGMKAWEILKARPRNVDLILAEVELPSMSGFSLLTLIMGHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELSHLWQHVWRRQASSNVSSDIQEKVEVTSENETASNHSTDYAAGVERNDNNTEKGSDTQSSSTKVDFEAGSKMQESSQPRQEKSSSNDFKLQKDGGHINLSQRLAMHENESGGLAMSCYANDDLPITLSMGLEPTNDGRSPYIASEAEGLLAIPSRDATALNHACINYPDDYQRRSPSAVATTKNFGSALHLDLSLRRCQPNDFEDRAADGRATLKHSSASAFTRYTSRPLQTLQAKSSSICDEQKEFGSNPEHTGSIAATPTSDTINTTLSLQNSNTSMPLMTSLSALSEVAKSSTSETEIPHQVTVKDLMSNSQCSGHGSLLSPNLCTQGGASSSPCSTLVTHPEPILAKQTVYPLNLENHNLEQFLNQHPNISDPGSRKLENSGQKLEYAENQGHISPTTDHSANSSLCGGNTSHVRSVGYPSTCGSNNNVNRVGIAARVTSESKNEEALSYQGGDPHWSSQREAALTKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRRVYTDDPLPAESNANTSNG 1941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6760695 6781485 + CmaCh02G011470.1 Cma02g01147 288898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01147 1941 MobiDBLite consensus disorder prediction 775 798 - -
Cma02g01147 1941 CDD psREC_PRR 1307 1410 - -
Cma02g01147 1941 Coils Coil 36 63 - -
Cma02g01147 1941 MobiDBLite consensus disorder prediction 1150 1174 - -
Cma02g01147 1941 MobiDBLite consensus disorder prediction 1142 1230 - -
Cma02g01147 1941 SMART REC_2 1305 1420 IPR001789 GO:0000160
Cma02g01147 1941 MobiDBLite consensus disorder prediction 1212 1230 - -
Cma02g01147 1941 MobiDBLite consensus disorder prediction 1182 1196 - -
Cma02g01147 1941 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1067 1129 IPR000504 GO:0003723
Cma02g01147 1941 MobiDBLite consensus disorder prediction 268 304 - -
Cma02g01147 1941 Pfam CCT motif 1881 1923 IPR010402 GO:0005515
Cma02g01147 1941 SMART rrm1_1 1066 1135 IPR000504 GO:0003723
Cma02g01147 1941 MobiDBLite consensus disorder prediction 774 798 - -
Cma02g01147 1941 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1065 1143 IPR000504 GO:0003723
Cma02g01147 1941 Pfam Response regulator receiver domain 1307 1417 IPR001789 GO:0000160
Cma02g01147 1941 MobiDBLite consensus disorder prediction 270 304 - -
Cma02g01147 1941 PANTHER OS08G0543600 PROTEIN 9 811 - -
Cma02g01147 1941 SUPERFAMILY CheY-like 1304 1430 IPR011006 -
Cma02g01147 1941 Coils Coil 102 122 - -
Cma02g01147 1941 MobiDBLite consensus disorder prediction 443 457 - -
Cma02g01147 1941 ProSiteProfiles CCT domain profile. 1881 1923 IPR010402 GO:0005515
Cma02g01147 1941 MobiDBLite consensus disorder prediction 437 458 - -
Cma02g01147 1941 MobiDBLite consensus disorder prediction 1434 1510 - -
Cma02g01147 1941 MobiDBLite consensus disorder prediction 1434 1461 - -
Cma02g01147 1941 PANTHER OS08G0543600 PROTEIN 9 811 - -
Cma02g01147 1941 SUPERFAMILY RNA-binding domain, RBD 1058 1155 IPR035979 GO:0003676
Cma02g01147 1941 MobiDBLite consensus disorder prediction 1033 1055 - -
Cma02g01147 1941 ProSiteProfiles Response regulatory domain profile. 1306 1424 IPR001789 GO:0000160
Cma02g01147 1941 MobiDBLite consensus disorder prediction 1660 1679 - -
Cma02g01147 1941 Coils Coil 133 188 - -
Cma02g01147 1941 Coils Coil 253 273 - -
Cma02g01147 1941 MobiDBLite consensus disorder prediction 1469 1500 - -
Cma02g01147 1941 SUPERFAMILY RNA-binding domain, RBD 1003 1057 IPR035979 GO:0003676
Cma02g01147 1941 CDD RRM2_SF2_plant_like 1065 1140 - -
Cma02g01147 1941 Gene3D - 1305 1500 - -
Cma02g01147 1941 Gene3D - 1064 1142 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01147 - - - csv:101218478 1294.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01147 Cma15g01000 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01147 Cma-Chr2:6760695 Cma15g01000 Cma-Chr15:6046970 0 dispersed
Cma11g00131 Cma-Chr11:701417 Cma02g01147 Cma-Chr2:6760695 2.03E-14 dispersed
Cma15g00999 Cma-Chr15:6041245 Cma02g01147 Cma-Chr2:6760695 2.08E-37 transposed
Cma14g02156 Cma-Chr14:14772231 Cma02g01147 Cma-Chr2:6760695 3.04E-26 wgd
Cma15g00995 Cma-Chr15:5988212 Cma02g01147 Cma-Chr2:6760695 3.58E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g982 Blo06g01050 Blo15g00076 . . . Bpe07g01028 . . . . Cma02g01147 Cma15g01000 Car02g00948 Car15g00935 . Cpe05g00579 . . . . . . . . Cla01g00014 . . Cco01g0015 Clacu01g0015 Cmu01g0015 . Cone1ag1013 Cone5ag0720 . . . Csa05g00002 Chy09g01478 . . . Bda06g00796 Bda15g00797 . . Bma08g00399 Bma12g01223 . Cmo02g01178 Cmo15g01064 . . . . . Cpe13g00335 Bhi12g00691 . . . Hepe06g0825 . . . . . . . . . . . . Cme09g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007665 1 2 1 2 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34506 PF00072 Response_reg 3.10E-20 CL0304 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01147 Cma_Chr02 FPKM 16.367207 18.557526 32.570602 33.132397 43.311234 46.152328 42.574024 38.296753 37.867836 37.04953