Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01148 ATGCCGTCTGCTCCCGTCGCCGACTCCACCGAGCCTGAGAAGGAGGCCGTCCAAATCTCGTCGTCTGCAGCCGAATTAGAGAAGAAGCTTCAGTTCGATGACAAACCGATTGTTGAAGACGTTGAGGATGACGACGATGACGATGACGACGAGGATGATGATGATGGAAAGGAGAACGGGGCTCTTGACGGAGGCTCAAATGAGAGTTCAAAGCAGAGCAGGAGTGAAAAGAAGAGTCGCAAGGCGATGCTGAAGCTGGGTATGAAACCAGTTACTGGTGTTAGCAGAGTCACCATTAAAAGAACCAAGAACATATTGTTTTTCATATCAAAACCTGATGTGTTCAAAAGTCCAAACTCTGAGACGTATGTGATATTTGGAGAGGCAAAGATAGAGGATTTGAGTTCTCAGTTGCAGACACAAGCTGCCCAGCAATTCAAGATGCCAGACATGGGACAGGTGATGGGAGGAAAATCAGAGATTTCTGGCAGTAGTGCAGCTGGAGCATTGGTTGAAGAGGAAGAGGAAGAGATTGATGAATCTGGGGTGGAGGACAGGGACATTGATTTGGTAATGACACAGGCTGGGGTGTCCAGAACCAAGGCCGTCAAGGCCCTCAAGACTCACGACGGAGACATTGTCAGCGCCATAATGGAGCTCACAACTTGA 669 48.73 MPSAPVADSTEPEKEAVQISSSAAELEKKLQFDDKPIVEDVEDDDDDDDDEDDDDGKENGALDGGSNESSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQTQAAQQFKMPDMGQVMGGKSEISGSSAAGALVEEEEEEIDESGVEDRDIDLVMTQAGVSRTKAVKALKTHDGDIVSAIMELTT 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6786034 6788096 + CmaCh02G011480.1 Cma02g01148 288899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01148 222 Pfam HYPK UBA domain 183 221 IPR044034 -
Cma02g01148 222 MobiDBLite consensus disorder prediction 1 84 - -
Cma02g01148 222 Gene3D - 183 220 - -
Cma02g01148 222 ProSiteProfiles NAC A/B domain profile. 73 138 IPR002715 -
Cma02g01148 222 SMART NAC_2 76 132 IPR002715 -
Cma02g01148 222 Gene3D - 82 135 IPR038187 -
Cma02g01148 222 MobiDBLite consensus disorder prediction 37 58 - -
Cma02g01148 222 CDD UBA_NAC_euk 185 221 - -
Cma02g01148 222 Pfam NAC domain 76 131 IPR002715 -
Cma02g01148 222 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 13 221 IPR016641 GO:0005854
Cma02g01148 222 PANTHER NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2 13 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01148 K03626 EGD2, NACA; nascent polypeptide-associated complex subunit alpha - thj:104814952 256.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01148 Cma-Chr2:6786034 Cma07g01111 Cma-Chr7:6020583 6.14E-69 dispersed
Cma02g01148 Cma-Chr2:6786034 Cma07g01110 Cma-Chr7:6017236 2.35E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g953 . . . . . . . . . . Cma02g01148 . Car02g00953 . . Cpe05g00575 . . . . . . . . Cla01g00001 . . . Clacu01g0001 Cmu01g0001 Cre09g2503 Cone1ag1027 Cone5ag0734 . . . . . . . . . Bda15g00799 . . . . . Cmo02g01184 . . . . . . . Bhi12g00740 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001063 2 3 1 2 2 2 3 2 2 2 3 3 5 2 2 5 3 6 3 2 1 2 3 2 2 2 3 5 2 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01148 Cma_Chr02 FPKM 7.421094 8.557647 1.822759 1.23243 46.287502 41.325947 42.76474 6.108608 5.320289 4.779893