Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01168 ATGGTTCCTGCTCAGATTGGCAGAGGAACGGCTGCCGGGAGAGCTCCGGTGCTGGTTTTCTCTTTATGGTGTCTGATCTGTCTGTCCCTCGCCGCTCGGTTATCCCCTTCCAAGCAGCAGCTTGAAGTTCAGAAGCATCTCAGGCGCTTAAACAAGCCTCCATTGAAAACAATCGAGAGTTCAGATGGGGATATAATCGATTGTGTCCACATTTCTAATCAACCAGCTTTTGATCATCCTTTCATCAAAGATCACAAAATTCTGACGAGGCCTACTTACCACCCAGAAGGGCTGTTTGATGAGAACAAGGTGTCTGAGAAGCCTAAAGAAAGAACAAACCCCATCAATCAGCTGTGGCATGCAAATGGAAGGTGCCCAGAAAACACCATTCCTATTAGAAGAACCAAGAAAGATGATGTTCTAAGAGCAAGCTCTGCCAAAAGATATGGAAAGAAAAGACATAGAAGCATTCCTCAACCGAGGTCTGCAGATCCTGATCTCATTAACCAAAGTGGTCATCAGCACGCAATAGCTTATGTGGAAGGAGATAAGTTTTATGGAGCAAAGGCAACAATCAACGTCTGGGAGCCCAAAATACAGCAGCCTAATGAGTTTAGCTTGTCTCAGTTATGGATATTAGGAGGCTCTTTTGGTCAAGATCTTAATAGTATTGAAGCTGGCTGGCAGGTCAGTCCAGATCTGTATGGTGATAACAACACAAGACTCTTCACTTACTGGACTAGCGATGCATATCAAGCCACAGGTTGCTATAACCTCCTCTGCTCAGGGTTTATTCAAGTGAACAGTGAAATAGCCATGGGAGCAAGCATCTCGCCTGTGTCTGCATTTCGAAGTCCCCAGTATGATATCAGCATACTTATCTGGAAGGATCCAAGTGAAGGACACTGGTGGATGCAGTTTGGCAATGACTACGTGTTGGGATATTGGCCATCTTTCCTATTCTCGTACCTGGCCGACAGTGCCTCGATGGTCGAGTGGGGAGGGGAGGTTGTGAATTCAGAGCCTGATGGATTGCACACTTCAACCCAGATGGGAAGTGGTCATTTTCCAGAAGAGGGGTTCGGGAAGTCGAGTTATTTCAGGAACATTCAAGTCGTTGACAGCTCAAACAATCTCAAAGCTCCCAAAGGGATTGGTACCTTTACAGAGCAATCAAACTGCTATGATGTTCAAACTGGCAGCAATGGAGATTGGGGCCATTACTTTTACTATGGAGGCCCTGGCAGAAACCAAAACTGCCCATGA 1266 46.05 MVPAQIGRGTAAGRAPVLVFSLWCLICLSLAARLSPSKQQLEVQKHLRRLNKPPLKTIESSDGDIIDCVHISNQPAFDHPFIKDHKILTRPTYHPEGLFDENKVSEKPKERTNPINQLWHANGRCPENTIPIRRTKKDDVLRASSAKRYGKKRHRSIPQPRSADPDLINQSGHQHAIAYVEGDKFYGAKATINVWEPKIQQPNEFSLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQVNSEIAMGASISPVSAFRSPQYDISILIWKDPSEGHWWMQFGNDYVLGYWPSFLFSYLADSASMVEWGGEVVNSEPDGLHTSTQMGSGHFPEEGFGKSSYFRNIQVVDSSNNLKAPKGIGTFTEQSNCYDVQTGSNGDWGHYFYYGGPGRNQNCP 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6884428 6887382 + CmaCh02G011680.1 Cma02g01168 288919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01168 421 Pfam Neprosin activation peptide 57 179 IPR025521 -
Cma02g01168 421 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 17 419 - -
Cma02g01168 421 MobiDBLite consensus disorder prediction 146 168 - -
Cma02g01168 421 Pfam Neprosin 203 414 IPR004314 -
Cma02g01168 421 PANTHER SIMILARITY TO CARBOXYL-TERMINAL PROTEINASE 17 419 - -
Cma02g01168 421 Gene3D - 196 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01168 - - - csv:101217856 822.002
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01168 Cma10g01028 CCT
Cma02g01168 Cma10g01028 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01168 Cma-Chr2:6884428 Cma10g01040 Cma-Chr10:5734645 0 dispersed
Cma20g00008 Cma-Chr20:20058 Cma02g01168 Cma-Chr2:6884428 5.84E-49 transposed
Cma10g01028 Cma-Chr10:5566282 Cma02g01168 Cma-Chr2:6884428 5.03E-170 wgd
Cma11g00780 Cma-Chr11:3791871 Cma02g01168 Cma-Chr2:6884428 0 wgd
Cma02g01168 Cma-Chr2:6884428 Cma20g00007 Cma-Chr20:17926 1.69E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g39 . . . . Bpe01g00357 . . Bma07g01361 Cmo10g01086 . Cma10g01028 . . . Sed08g1250 Cpe05g00561 Cpe18g00089 Bhi02g01712 Tan09g1003 Cmetu02g0731 . Hepe09g0989 . . Cla02g02360 Cam02g2511 Cec02g2556 Cco02g2588 Clacu02g2483 Cmu02g2414 Cre02g2735 . . . . Lsi06g00396 . Chy05g00014 Cme05g00017 Blo08g00155 Blo14g00326 . Bda09g00349 Bpe08g00324 . Bma07g00314 Bma11g00341 Sed01g3421 Cmo02g01201 . Cma02g01168 . Car02g00967 . . Cpe04g00982 Bhi10g00479 Tan07g0580 Cmetu05g1751 . Hepe08g0012 . . Cla03g01397 Cam03g1477 Cec03g1513 Cco03g1509 Clacu03g1500 Cmu03g2057 Cre03g1727 . Csa01g03048 Chy02g01326 Cme02g00361
Vvi16g832 . . . . . . . . . . Cma02g01168 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma12g01187 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000279 5 5 6 8 5 4 5 4 4 4 4 4 7 4 4 6 4 6 4 4 4 4 4 4 4 4 4 11 6 6 148
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01168 Cma_Chr02 FPKM 44.281975 44.26543 28.861462 29.549269 81.936523 78.677261 86.844353 2.761668 2.234113 2.790661